RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 JPT2Q9H910 190 aa9.89□□□□□ -0.83
SHKBP1-217ENST00000598558 C19orf71A6NCJ1 209 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 K7EN84 100 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 RS1O15537 224 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 SRP19P09132 144 aaKnown RBP9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 MGST1P10620 155 aaKnown RBP9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 GNG4P50150 75 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 DMRTA1Q5VZB9 504 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 OCC1Q8TAD7 63 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 PTH2Q96A98 100 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 PARLQ9H300 379 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 SCRT2Q9NQ03 307 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 IL36BQ9NZH7 164 aa9.88□□□□□ -0.83
SHKBP1-217ENST00000598558 TRAV4A0A0B4J268 109 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 TMEM250H0YL14 139 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 S100A4P26447 101 aaKnown RBP9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 CRYBA4P53673 196 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 IFITM2Q01629 132 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 CFAP126Q5VTH2 177 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 C15orf53Q8NAA6 179 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 OR4C5Q8NGB2 326 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 EIF5A2Q9GZV4 153 aaKnown RBP9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 HHLA3Q9XRX5 114 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 KMT2AQ03164 3969 aa9.87□□□□□ -0.83
SHKBP1-217ENST00000598558 A0A096LPF7 62 aa9.86□□□□□ -0.83
SHKBP1-217ENST00000598558 GZMBP10144 247 aa9.86□□□□□ -0.83
SHKBP1-217ENST00000598558 Q6ZSN1 163 aa9.86□□□□□ -0.83
SHKBP1-217ENST00000598558 MUC4Q99102 2169 aa9.86□□□□□ -0.83
SHKBP1-217ENST00000598558 SAMD10Q9BYL1 202 aa9.86□□□□□ -0.83
SHKBP1-217ENST00000598558 IGHV3-73A0A0B4J1V6 119 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 TRGV4A0A0C4DH28 118 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 MUC21A0A0G2JKD1 596 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 LOC100131303A0A0U1RQF7 123 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 MUC21A0A140T8X8 626 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 H3BNG1 76 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 PAX4O43316 350 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 CEBPGP53567 150 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 SMIM12Q96EX1 92 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 PRO0255Q9UI72 69 aa9.85□□□□□ -0.83
SHKBP1-217ENST00000598558 P0DMU3 169 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 FAM231AP0DMU4 169 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 FAM231CP0DMU5 169 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 GATA1P15976 413 aaPredicted RBP9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 ESRGQ1W209 222 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 UFSP1Q6NVU6 142 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 NUDT10Q8NFP7 164 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 NUDT11Q96G61 164 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 SSBP4Q9BWG4 385 aaPredicted RBP9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 LINC00588Q9Y4M8 146 aa9.84□□□□□ -0.83
SHKBP1-217ENST00000598558 NDUFS6O75380 124 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-217ENST00000598558 CXCL1P09341 107 aa9.83□□□□□ -0.84
SHKBP1-217ENST00000598558 OR2D3Q8NGH3 330 aa9.83□□□□□ -0.84
SHKBP1-217ENST00000598558 OR10AG1Q8NH19 301 aa9.83□□□□□ -0.84
SHKBP1-217ENST00000598558 RNASE7Q9H1E1 156 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-217ENST00000598558 Q9UF83 564 aa9.83□□□□□ -0.84
SHKBP1-217ENST00000598558 M0R381 172 aa9.82□□□□□ -0.84
SHKBP1-217ENST00000598558 SNAI2O43623 268 aa9.82□□□□□ -0.84
SHKBP1-217ENST00000598558 RNF212Q495C1 297 aa9.82□□□□□ -0.84
SHKBP1-217ENST00000598558 PIK3CD-AS1Q5SR53 167 aa9.82□□□□□ -0.84
SHKBP1-217ENST00000598558 NXPH4O95158 308 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 CRYGDP07320 174 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 IGLC6P0CF74 106 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 MED14OSP0DP75 135 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 SSTP61278 116 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 SLAQ13239 276 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 SLC25A29Q8N8R3 303 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 DAZAP1Q96EP5 407 aaKnown RBP9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 SFRP2Q96HF1 295 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 PHLDA3Q9Y5J5 127 aa9.81□□□□□ -0.84
SHKBP1-217ENST00000598558 A0A087WWL8 130 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 K7EQD1 137 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 P01737 135 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 OR5AL1P0C617 328 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 GYPEP15421 78 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 UBE2DNLQ8IWF7 75 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 ZNRF2Q8NHG8 242 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 SMIM7Q9BQ49 75 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 DNAH6Q9C0G6 4158 aa9.8□□□□□ -0.84
SHKBP1-217ENST00000598558 IGLV2-18A0A075B6J9 118 aa9.79□□□□□ -0.84
SHKBP1-217ENST00000598558 ZNF727A8MUV8 499 aa9.79□□□□□ -0.84
SHKBP1-217ENST00000598558 A8MWV9 139 aa9.79□□□□□ -0.84
SHKBP1-217ENST00000598558 LINC01551Q86U37 167 aa9.79□□□□□ -0.84
SHKBP1-217ENST00000598558 MSRB1Q9NZV6 116 aa9.79□□□□□ -0.84
SHKBP1-217ENST00000598558 ICOSQ9Y6W8 199 aa9.79□□□□□ -0.84
SHKBP1-217ENST00000598558 M0R2N4 97 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 LYPD5Q6UWN5 251 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 ZFP2Q6ZN57 461 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 ZFP82Q8N141 532 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 C14orf178Q8N769 122 aaPredicted RBP9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 FER1L6-AS1Q8NA97 138 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 SYT8Q8NBV8 401 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 BIN3Q9NQY0 253 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 LY96Q9Y6Y9 160 aa9.78□□□□□ -0.84
SHKBP1-217ENST00000598558 TRBV6-4A0A1B0GX49 114 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 CIDEAO60543 219 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 CCL18P55774 89 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 RPS20P60866 119 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 PEA15Q15121 130 aa9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 MRPL23Q16540 153 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-217ENST00000598558 CLLU1Q5K131 121 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms