RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 SFT2D1Q8WV19 159 aa7.55□□□□□ -1.2
LIG3-214ENST00000592244 LINC00479Q96M42 142 aa7.55□□□□□ -1.2
LIG3-214ENST00000592244 C9orf85Q96MD7 179 aa7.55□□□□□ -1.2
LIG3-214ENST00000592244 TRBV6-4A0A1B0GX49 114 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 A8MWV9 139 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 C16orf90A8MZG2 172 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 B4DEV8 164 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 TEX46H3BTG2 121 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 RS1O15537 224 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 TPT1P13693 172 aaKnown RBP7.54□□□□□ -1.2
LIG3-214ENST00000592244 GATA1P15976 413 aaPredicted RBP7.54□□□□□ -1.2
LIG3-214ENST00000592244 AKR1C3P42330 323 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 TIRAPP58753 221 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 LGALSLQ3ZCW2 172 aaPredicted RBP7.54□□□□□ -1.2
LIG3-214ENST00000592244 CFAP126Q5VTH2 177 aa7.54□□□□□ -1.2
LIG3-214ENST00000592244 TRAV8-6A0A0B4J262 113 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 TRBV6-1A0A0K0K1D8 114 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 H2AFB1P0C5Y9 115 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 LINC00315P59091 139 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 ZNF506Q5JVG8 444 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 MBD3L1Q8WWY6 194 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 IL36BQ9NZH7 164 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 C11orf21Q9P2W6 132 aa7.53□□□□□ -1.2
LIG3-214ENST00000592244 RHODO00212 210 aa7.52□□□□□ -1.21
LIG3-214ENST00000592244 PAGE4O60829 102 aa7.52□□□□□ -1.21
LIG3-214ENST00000592244 RNASE3P12724 160 aaKnown RBP7.52□□□□□ -1.21
LIG3-214ENST00000592244 RAB5CP51148 216 aa7.52□□□□□ -1.21
LIG3-214ENST00000592244 ZFP2Q6ZN57 461 aa7.52□□□□□ -1.21
LIG3-214ENST00000592244 COX8CQ7Z4L0 72 aa7.52□□□□□ -1.21
LIG3-214ENST00000592244 SLC25A29Q8N8R3 303 aa7.52□□□□□ -1.21
LIG3-214ENST00000592244 KRTAP1-5Q9BYS1 174 aa7.52□□□□□ -1.21
LIG3-214ENST00000592244 IGKV3D-20A0A0C4DH25 116 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 PGPEP1LA6NFU8 196 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 SH2D1AO60880 128 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 LTAP01374 205 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 DNAH10OSP0CZ25 163 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 ERVFC1-1P60608 527 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 TMUB2Q71RG4 321 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 OR11H4Q8NGC9 324 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 PHLDA3Q9Y5J5 127 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 DNAH2Q9P225 4427 aa7.51□□□□□ -1.21
LIG3-214ENST00000592244 IGHV3-73A0A0B4J1V6 119 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 IGHV3-38A0A0C4DH36 116 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 A6NJY4 79 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 KRBOX1C9JBD0 128 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 H3BVH4 76 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 M0R036 132 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 CRYGDP07320 174 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 OR10J3Q5JRS4 329 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 DNLZQ5SXM8 178 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 SPATA12Q7Z6I5 190 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 ZNF575Q86XF7 245 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 ATP6V0E2Q8NHE4 81 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 ZC2HC1AQ96GY0 325 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 MANBALQ9NQG1 85 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 MSRB1Q9NZV6 116 aa7.5□□□□□ -1.21
LIG3-214ENST00000592244 DNAH17Q9UFH2 4485 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 LOC100131303A0A0U1RQF7 123 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 A0A1B0GV50 99 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 ARMS2P0C7Q2 107 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 ZNF674Q2M3X9 581 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 BAGE2Q86Y30 109 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 WFDC10BQ8IUB3 73 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 ZFP82Q8N141 532 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 PARLQ9H300 379 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 PGPEP1Q9NXJ5 209 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 FAT2Q9NYQ8 4349 aa7.49□□□□□ -1.21
LIG3-214ENST00000592244 A0A087WWC5 75 aa7.48□□□□□ -1.21
LIG3-214ENST00000592244 IFNA1P01562 189 aa7.48□□□□□ -1.21
LIG3-214ENST00000592244 CRIP1P50238 77 aa7.48□□□□□ -1.21
LIG3-214ENST00000592244 LELP1Q5T871 98 aa7.48□□□□□ -1.21
LIG3-214ENST00000592244 TCTE3Q8IZS6 198 aa7.48□□□□□ -1.21
LIG3-214ENST00000592244 GTSF1LQ9H1H1 148 aa7.48□□□□□ -1.21
LIG3-214ENST00000592244 GNG13Q9P2W3 67 aa7.48□□□□□ -1.21
LIG3-214ENST00000592244 TRAV1-1A0A0B4J248 108 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 SCO2A0A1W2PP80 73 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 GRIFINA4D1Z8 144 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 M0R381 172 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 PSCAO43653 123 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 CDK2AP2O75956 126 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 LINC01556Q5JQF7 62 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 CDPF1Q6NVV7 123 aa7.47□□□□□ -1.21
LIG3-214ENST00000592244 TMSB15BA0A087X1C1 80 aa7.46□□□□□ -1.22
LIG3-214ENST00000592244 CXCL1P09341 107 aa7.46□□□□□ -1.22
LIG3-214ENST00000592244 FAM74A4Q5TZK3 123 aa7.46□□□□□ -1.22
LIG3-214ENST00000592244 Q6ZRN7 208 aaPredicted RBP7.46□□□□□ -1.22
LIG3-214ENST00000592244 SLC51BQ86UW2 128 aa7.46□□□□□ -1.22
LIG3-214ENST00000592244 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.46□□□□□ -1.22
LIG3-214ENST00000592244 DAZAP1Q96EP5 407 aaKnown RBP7.46□□□□□ -1.22
LIG3-214ENST00000592244 SFRP2Q96HF1 295 aa7.46□□□□□ -1.22
LIG3-214ENST00000592244 PKHD1P08F94 4074 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 GAGE12JA6NER3 117 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 PDE6DO43924 150 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 TAGLN2P37802 199 aaKnown RBP7.45□□□□□ -1.22
LIG3-214ENST00000592244 GAGE1Q13065 139 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 GAGE4Q13068 117 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 GAGE5Q13069 117 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 GAGE13Q4V321 117 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 TOR2AQ5JU69 321 aa7.45□□□□□ -1.22
LIG3-214ENST00000592244 KCNIP4Q6PIL6 250 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms