RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 S100A1P23297 94 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 RPS20P60866 119 aaKnown RBP3.86□□□□□ -1.79
LIG3-210ENST00000588109 RPL19P84098 196 aaKnown RBP3.86□□□□□ -1.79
LIG3-210ENST00000588109 RHEBQ15382 184 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 DEFB135Q30KP9 77 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 ANXA2RQ3ZCQ2 193 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 LINC00322Q6ZN03 302 aaPredicted RBP3.86□□□□□ -1.79
LIG3-210ENST00000588109 Q6ZQT7 251 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 FAM231DQ6ZW35 169 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 ZNF575Q86XF7 245 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 TMEM256Q8N2U0 113 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 OR2D3Q8NGH3 330 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 MRAPQ8TCY5 172 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 KCNS1Q96KK3 526 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 RCHY1Q96PM5 261 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 C20orf144Q9BQM9 153 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 PYGO2Q9BRQ0 406 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 RPP21Q9H633 154 aaKnown RBP3.86□□□□□ -1.79
LIG3-210ENST00000588109 RPS10P5Q9NQ39 176 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 OSTCQ9NRP0 149 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 TIMM8BQ9Y5J9 83 aaPredicted RBP3.86□□□□□ -1.79
LIG3-210ENST00000588109 PKD1L1Q8TDX9 2849 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 C7orf77A4D0Y5 90 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 GRIFINA4D1Z8 144 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 C19orf71A6NCJ1 209 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 ZNF324O75467 553 aaPredicted RBP3.85□□□□□ -1.79
LIG3-210ENST00000588109 GIG44P09565 113 aaPredicted RBP3.85□□□□□ -1.79
LIG3-210ENST00000588109 NPSP0C0P6 89 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 RBMY1A1P0DJD3 496 aaKnown RBP3.85□□□□□ -1.79
LIG3-210ENST00000588109 RBMY1CP0DJD4 496 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 S100A4P26447 101 aaKnown RBP3.85□□□□□ -1.79
LIG3-210ENST00000588109 ASIPP42127 132 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 TIRAPP58753 221 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 RBMY1FQ15415 496 aaKnown RBP3.85□□□□□ -1.79
LIG3-210ENST00000588109 RNF212Q495C1 297 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 Q6ZWC4 215 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 C1orf158Q8N1D5 194 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 TPPP3Q9BW30 176 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 CTDSP1Q9GZU7 261 aa3.85□□□□□ -1.79
LIG3-210ENST00000588109 MGAM2Q2M2H8 2515 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 IGKV3D-20A0A0C4DH25 116 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 A8MWL6 223 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 GNRH2O43555 120 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 SPRY2O43597 315 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 TYMSP04818 313 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 GZMBP10144 247 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 S100PP25815 95 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 TCL1AP56279 114 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 FAM3BP58499 235 aaPredicted RBP3.84□□□□□ -1.79
LIG3-210ENST00000588109 DEFA6Q01524 100 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 ZNF415Q09FC8 603 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 RRN3P1Q2M238 152 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 KCNIP4Q6PIL6 250 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 ZNF705AQ6ZN79 300 aaPredicted RBP3.84□□□□□ -1.79
LIG3-210ENST00000588109 CSNK1G2-AS1Q8NCQ2 148 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 OR11H2Q8NH07 326 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 BORCS7Q96B45 105 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 RNF183Q96D59 192 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 TP53TG3Q9ULZ0 132 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 V9GYV3 84 aa3.84□□□□□ -1.79
LIG3-210ENST00000588109 DNHD1Q96M86 4753 aa3.84□□□□□ -1.8
LIG3-210ENST00000588109 DNAH3Q8TD57 4116 aa3.84□□□□□ -1.8
LIG3-210ENST00000588109 A0A087WWC5 75 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 A0A1W2PPQ1 181 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 SMIM9A6NGZ8 99 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 HIGD1CA8MV81 97 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 SNURFLB1AK76 121 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 H3BVH4 76 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 PRM2P04554 102 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 EMP1P54849 157 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 SSTP61278 116 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 SUMO2P61956 95 aaKnown RBP3.83□□□□□ -1.8
LIG3-210ENST00000588109 TDRG1Q3Y452 100 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 ATRAIDQ6UW56 229 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 SBSPONQ8IVN8 264 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 FER1L6-AS1Q8NA97 138 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 TSKUQ8WUA8 353 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 TMEM263Q8WUH6 116 aaKnown RBP3.83□□□□□ -1.8
LIG3-210ENST00000588109 C16orf74Q96GX8 76 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 PGLYRP4Q96LB8 373 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 LINC00467Q9BRT7 94 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 RETNQ9HD89 108 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 IL36BQ9NZH7 164 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 MDFICQ9P1T7 246 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 NAT8BQ9UHF3 227 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 TP53TG1Q9Y2A0 90 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 PHLDA3Q9Y5J5 127 aa3.83□□□□□ -1.8
LIG3-210ENST00000588109 NOTCH1P46531 2555 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 IGHV3-16A0A0C4DH30 117 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 MUC21A0A0G2JKD1 596 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 MUC21A0A140T8X8 626 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 SMIM27A0A1W2PRY6 76 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 FAM231BA6NCW3 169 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 F2Z2F3 143 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 M0R381 172 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 SPINK4O60575 86 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 CXCL1P09341 107 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 ARMS2P0C7Q2 107 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 MIFP14174 115 aa3.82□□□□□ -1.8
LIG3-210ENST00000588109 AZU1P20160 251 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms