RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 VSTM2AQ8TAG5 236 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 OR4C12Q96R67 309 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 SEC11CQ9BY50 192 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 COMMD5Q9GZQ3 224 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 ZNF586Q9NXT0 402 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 PIGBOS1A0A0B4J2F0 54 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 IGLC7A0M8Q6 106 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 CEBPZOSA8MTT3 80 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 ZNF705GA8MUZ8 300 aaPredicted RBP5.07□□□□□ -1.6
VPS53-217ENST00000575100 PRAC2D3DTV9 90 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 H7BYZ3 331 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 DAD1P61803 113 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 OR4A5Q8NH83 315 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 CIB3Q96Q77 187 aaPredicted RBP5.07□□□□□ -1.6
VPS53-217ENST00000575100 EDA2RQ9HAV5 297 aa5.07□□□□□ -1.6
VPS53-217ENST00000575100 PMS2P5A8MQ11 134 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 HMSDA8MTL9 139 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 KLLNB2CW77 178 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 CST7O76096 145 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 FXYD3Q14802 87 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 CENPWQ5EE01 88 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 SPANXN5Q5MJ07 72 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 RASL11AQ6T310 242 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 LCNL1Q6ZST4 164 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 TMEM252Q8N6L7 170 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 NAA38Q9BRA0 125 aaKnown RBP5.06□□□□□ -1.6
VPS53-217ENST00000575100 PSENENQ9NZ42 101 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 LINC00527Q9UJ94 153 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 TGP01266 2768 aa5.06□□□□□ -1.6
VPS53-217ENST00000575100 WI2-2373I1.2A0A1W2PRP0 233 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 HLA-DRB1P01911 266 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 RPL27AP46776 148 aaKnown RBP5.05□□□□□ -1.6
VPS53-217ENST00000575100 PSMB2P49721 201 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 TMEM14EPQ6UXP3 125 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 AQP10Q96PS8 301 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 HIST1H2BLQ99880 126 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 RBM12B-AS1Q9P1G2 102 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 CYSLTR1Q9Y271 337 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 MOB4Q9Y3A3 225 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 CMYA5Q8N3K9 4069 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 A0A0D9SG52 128 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 A0A1B0GV50 99 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 PGPA6NDG6 321 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 G3V318 75 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 PRH1P02810 166 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 LINC00694P0DN24 101 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 RNASE2P10153 161 aaKnown RBP5.05□□□□□ -1.6
VPS53-217ENST00000575100 C6orf99Q4VX62 202 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 Q6ZRU5 148 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 CSNK1G2-AS1Q8NCQ2 148 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 PRADC1Q9BSG0 188 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 PARP11Q9NR21 331 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 FKBP11Q9NYL4 201 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 TRRAPQ9Y4A5 3859 aa5.05□□□□□ -1.6
VPS53-217ENST00000575100 SMIM26A0A096LP01 95 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 LOC107984640A0A0U1RRK4 108 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 RPL37AP8A6NKH3 93 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 IGHV3-48P01763 117 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 PSG9Q00887 426 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 ZNF345Q14585 488 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 FOXI2Q6ZQN5 318 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 KCNRGQ8N5I3 272 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 OR5C1Q8NGR4 320 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 SAMD10Q9BYL1 202 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 CYTL1Q9NRR1 136 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 IGHV3-21A0A0B4J1V1 117 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 IGHV3-16A0A0C4DH30 117 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 INS-IGF2F8WCM5 200 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 IGLC1P0CG04 106 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 OR10J1P30954 320 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 REG3AQ06141 175 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 FAM222AQ5U5X8 452 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 C10orf99Q6UWK7 81 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 NTN5Q8WTR8 489 aaPredicted RBP5.04□□□□□ -1.6
VPS53-217ENST00000575100 C8orf49Q96NF6 230 aa5.04□□□□□ -1.6
VPS53-217ENST00000575100 MRPL36Q9P0J6 103 aaKnown RBP5.04□□□□□ -1.6
VPS53-217ENST00000575100 PRKDCP78527 4128 aaKnown RBP5.03□□□□□ -1.6
VPS53-217ENST00000575100 TRAV8-3A0A0A6YYJ7 113 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 SMIM1B2RUZ4 78 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 B4DEV8 164 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 RPL7L1Q6DKI1 246 aaKnown RBP5.03□□□□□ -1.6
VPS53-217ENST00000575100 UNQ5815/PRO19632Q6UWF5 114 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 HRCT1Q6UXD1 115 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 KRTAP19-1Q8IUB9 90 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 FXYD5Q96DB9 178 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 PHYHIPLQ96FC7 376 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 ZNF702PQ9H963 129 aa5.03□□□□□ -1.6
VPS53-217ENST00000575100 IGHV6-1A0A0B4J1U7 121 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 TRAV26-2A0A0B4J265 109 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 BCL2L11O43521 198 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 ADCYAP1P18509 176 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 MDKP21741 143 aaPredicted RBP5.02□□□□□ -1.61
VPS53-217ENST00000575100 SNCAP37840 140 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 TDRG1Q3Y452 100 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 C2orf83Q53S99 150 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 MORN5Q5VZ52 161 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 F11RQ9Y624 299 aaKnown RBP5.02□□□□□ -1.61
VPS53-217ENST00000575100 S4R3C0 116 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 VWFP04275 2813 aa5.02□□□□□ -1.61
VPS53-217ENST00000575100 IGKV1OR2-108A0A075B7D4 117 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms