RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 C15orf53Q8NAA6 179 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 C18orf32Q8TCD1 76 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 PPDPFLQ8WWR9 84 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 RMI2Q96E14 147 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 CST11Q9H112 138 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 DPH3P1Q9H4G8 78 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 CMC2Q9NRP2 79 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 HHLA3Q9XRX5 114 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 TRAPPC1Q9Y5R8 145 aa2.46□□□□□ -2.02
NUP88-208ENST00000574087 ROBO1Q9Y6N7 1651 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 IGLV3-12A0A075B6K2 115 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 IGKV1-9A0A0C4DH69 117 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 A8MWL6 223 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 BPY2O14599 106 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 TCL1BO95988 128 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 APCSP02743 223 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 SCGB1C2P0DMR2 95 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 DYNLT3P51808 116 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 NPC2P61916 151 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 IGFBP7Q16270 282 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 ZNF791Q3KP31 576 aaPredicted RBP2.45□□□□□ -2.02
NUP88-208ENST00000574087 LINC01554Q52M75 96 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 ORMDL2Q53FV1 153 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 MPV17L2Q567V2 206 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 KPRPQ5T749 579 aaPredicted RBP2.45□□□□□ -2.02
NUP88-208ENST00000574087 NOXRED1Q6NXP6 359 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 FAM213BQ8TBF2 198 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 DIRC1Q969H9 104 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 CAMK2N2Q96S95 79 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 DSCR8Q96T75 97 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 MANBALQ9NQG1 85 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 ZNF706Q9Y5V0 76 aaPredicted RBP2.45□□□□□ -2.02
NUP88-208ENST00000574087 KIAA1671Q9BY89 1806 aa2.45□□□□□ -2.02
NUP88-208ENST00000574087 COL14A1Q05707 1796 aaKnown RBP2.44□□□□□ -2.02
NUP88-208ENST00000574087 EML6Q6ZMW3 1958 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 TRAV1-1A0A0B4J248 108 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 MUC21A0A140T8X8 626 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 C9JCJ5 164 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 C17orf112F2Z3M2 114 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 SYS1-DBNDD2H3BUS1 97 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 C19orf84I3L1E1 186 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 ZNF737O75373 536 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 HBDP02042 147 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 ZNF688P0C7X2 276 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 RNASE4P34096 147 aaKnown RBP2.44□□□□□ -2.02
NUP88-208ENST00000574087 CSN1S1P47710 185 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 KRTDAPP60985 99 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 FGF12P61328 243 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 UBE2BP63146 152 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 WFDC2Q14508 124 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 INSL4Q14641 139 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 ETDBQ3ZM63 59 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 KRTAP5-2Q701N4 177 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 BAGE3Q86Y29 109 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 BAGE2Q86Y30 109 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 C3orf56Q8N813 242 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 SLC25A29Q8N8R3 303 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 CLDND2Q8NHS1 167 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 FGF13Q92913 245 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 RNASE6Q93091 150 aaKnown RBP2.44□□□□□ -2.02
NUP88-208ENST00000574087 UPK3BQ9BT76 320 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 LY75O60449 1722 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 TSC2P49815 1807 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 GPR179Q6PRD1 2367 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 NHSQ6T4R5 1651 aa2.44□□□□□ -2.02
NUP88-208ENST00000574087 MCM3APO60318 1980 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 ATG2BQ96BY7 2078 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 ANKRD36A6QL64 1941 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 IGHV1-45A0A0A0MS14 117 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 A0A1B0GW54 56 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 LOC730098B7Z3J9 87 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 K7EM74 188 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 IGKCP01834 107 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 HLA-DQA1P01909 254 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 SSR2P43308 183 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 ZNF117Q03924 483 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 NMSQ5H8A3 153 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 PRR9Q5T870 116 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 CYP2G1PQ6ZSU1 146 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 C7orf65Q6ZTY9 151 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 SCXQ7RTU7 201 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 DEFB106AQ8N104 65 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 TMEM256Q8N2U0 113 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 WFDC5Q8TCV5 224 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 C10orf105Q8TEF2 133 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 LINC01600Q96MT4 127 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 S4R3C0 116 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 LOC285556D6RIA3 1793 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 TRPM7Q96QT4 1865 aa2.43□□□□□ -2.02
NUP88-208ENST00000574087 NYNRINQ9P2P1 1898 aaKnown RBP2.43□□□□□ -2.02
NUP88-208ENST00000574087 WDR90Q96KV7 1748 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 NRXN2Q9P2S2 1712 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 ANKRD12Q6UB98 2062 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 PIGBOS1A0A0B4J2F0 54 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 H3BUT2 72 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 K7ERJ3 54 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 SDCBPO00560 298 aaPredicted RBP2.42□□□□□ -2.02
NUP88-208ENST00000574087 PRM2P04554 102 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 CD7P09564 240 aa2.42□□□□□ -2.02
NUP88-208ENST00000574087 CCL4P13236 92 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms