RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RNF125Q96EQ8 232 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 C20orf173Q96LM9 149 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 CLUHP3Q96NS8 147 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 TMEM191AQ9H0A3 160 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 C11orf1Q9H5F2 150 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 RPRMQ9NS64 109 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 A8MTW9 85 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 PRSS46E5RG02 174 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 F6UB75 175 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 M0R2N4 97 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 ZNF324O75467 553 aaPredicted RBP4.77□□□□□ -1.65
VPS53-213ENST00000572334 SCGB2A1O75556 95 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 NUDT3O95989 172 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 IGKV3-20P01619 116 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 SNRPD3P62318 126 aaKnown RBP4.77□□□□□ -1.65
VPS53-213ENST00000572334 HIST1H1AQ02539 215 aaPredicted RBP4.77□□□□□ -1.65
VPS53-213ENST00000572334 LGALS9BQ3B8N2 356 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 SLC25A34Q6PIV7 304 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 AMTNQ6UX39 209 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 STPG4Q8N801 248 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 TMEM147Q9BVK8 224 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 C1QTNF4Q9BXJ3 329 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 KRTAP4-5Q9BYR2 181 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 DKK2Q9UBU2 259 aa4.77□□□□□ -1.65
VPS53-213ENST00000572334 DNAH5Q8TE73 4624 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 A0A1W2PPV4 95 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 PRSS29PA6NIE9 313 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 C9JCJ5 164 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 SLC17A3O00476 420 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 SYNGR2O43760 224 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 HSBP1O75506 76 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 SERF1AO75920 110 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 CST7O76096 145 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 PRM2P04554 102 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 P0DMU3 169 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 FAM231AP0DMU4 169 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 FAM231CP0DMU5 169 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 HINT1P49773 126 aaPredicted RBP4.76□□□□□ -1.65
VPS53-213ENST00000572334 PAX9P55771 341 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 FFAR4Q5NUL3 377 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 FAM222AQ5U5X8 452 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 FOXI2Q6ZQN5 318 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 THAP8Q8NA92 274 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 OR10G9Q8NGN4 311 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 OR10G7Q8NGN6 311 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 RSG1Q9BU20 258 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 ZNF331Q9NQX6 463 aaPredicted RBP4.76□□□□□ -1.65
VPS53-213ENST00000572334 PSENENQ9NZ42 101 aa4.76□□□□□ -1.65
VPS53-213ENST00000572334 APOBP04114 4563 aaKnown RBP4.75□□□□□ -1.65
VPS53-213ENST00000572334 TRAV8-2A0A0B4J237 113 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 A0A0J9YX75 114 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 SMIM9A6NGZ8 99 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 SNURFLB1AK76 121 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 CRXO43186 299 aaPredicted RBP4.75□□□□□ -1.65
VPS53-213ENST00000572334 CXorf1O96002 111 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 SPART-AS1P0CW21 52 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 MED14OSP0DP75 135 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 GNG4P50150 75 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 EMP1P54849 157 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 PLP1P60201 277 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 LYZP61626 148 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 UBE2G1P62253 170 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 RAB31Q13636 194 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 TMEM256Q8N2U0 113 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 FER1L6-AS1Q8NA97 138 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 TRGV9Q99603 122 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 TMEM70Q9BUB7 260 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 NAT8BQ9UHF3 227 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 YTHDF2Q9Y5A9 579 aaKnown RBP4.75□□□□□ -1.65
VPS53-213ENST00000572334 RFNGQ9Y644 331 aa4.75□□□□□ -1.65
VPS53-213ENST00000572334 IGLV2-18A0A075B6J9 118 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 IGHV3OR16-12A0A075B7B8 117 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 PLAC8L1A1L4L8 177 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 TMEM189A5PLL7 270 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 H3BRM9 83 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 ISLRO14498 428 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 SIVA1O15304 175 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 IAPPP10997 89 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 GATA2P23769 480 aaPredicted RBP4.74□□□□□ -1.65
VPS53-213ENST00000572334 ATP5IP56385 69 aaPredicted RBP4.74□□□□□ -1.65
VPS53-213ENST00000572334 RPL24P83731 157 aaKnown RBP4.74□□□□□ -1.65
VPS53-213ENST00000572334 PSG9Q00887 426 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 SLC38A11Q08AI6 406 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 IGFL4Q6B9Z1 124 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 ZNF575Q86XF7 245 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 CHCHD1Q96BP2 118 aaKnown RBP4.74□□□□□ -1.65
VPS53-213ENST00000572334 OSTCQ9NRP0 149 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 HSPB8Q9UJY1 196 aa4.74□□□□□ -1.65
VPS53-213ENST00000572334 PMS2P5A8MQ11 134 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 M0R2Z0 102 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 APCSP02743 223 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 C3orf79P0CE67 100 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 STAG3L2P0CL84 134 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 FABP2P12104 132 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 ID1P41134 155 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 TCL1AP56279 114 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 SPATA31B1PQ5VZV4 182 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 AMMECR1LQ6DCA0 310 aa4.73□□□□□ -1.65
VPS53-213ENST00000572334 ATP5L2Q7Z4Y8 100 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms