RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 ZNF506Q5JVG8 444 aa13.85□□□□□ -0.19
NUP88-204ENST00000572290 LYPD5Q6UWN5 251 aa13.85□□□□□ -0.19
NUP88-204ENST00000572290 A0A1W2PPQ1 181 aa13.84□□□□□ -0.19
NUP88-204ENST00000572290 CIDEAO60543 219 aa13.84□□□□□ -0.19
NUP88-204ENST00000572290 S100A9P06702 114 aaKnown RBP13.84□□□□□ -0.19
NUP88-204ENST00000572290 GATA1P15976 413 aaPredicted RBP13.84□□□□□ -0.19
NUP88-204ENST00000572290 FAM162BQ5T6X4 162 aa13.84□□□□□ -0.19
NUP88-204ENST00000572290 CFAP126Q5VTH2 177 aa13.84□□□□□ -0.19
NUP88-204ENST00000572290 SCO2A0A1W2PP80 73 aa13.83□□□□□ -0.2
NUP88-204ENST00000572290 M0R036 132 aa13.83□□□□□ -0.2
NUP88-204ENST00000572290 NXPH4O95158 308 aa13.83□□□□□ -0.2
NUP88-204ENST00000572290 TXNDC17Q9BRA2 123 aa13.83□□□□□ -0.2
NUP88-204ENST00000572290 KRTAP1-5Q9BYS1 174 aa13.83□□□□□ -0.2
NUP88-204ENST00000572290 DNAH11Q96DT5 4516 aa13.83□□□□□ -0.2
NUP88-204ENST00000572290 DYNC1H1Q14204 4646 aaKnown RBP13.83□□□□□ -0.2
NUP88-204ENST00000572290 MUC4Q99102 2169 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 hCG_2014768A0A024R1R8 64 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 KRBOX1C9JBD0 128 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 SIVA1O15304 175 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 CCL20P78556 96 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 ZNF674Q2M3X9 581 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 AKAP14Q86UN6 197 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 SLC51BQ86UW2 128 aa13.82□□□□□ -0.2
NUP88-204ENST00000572290 IGHV3-73A0A0B4J1V6 119 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 TRAV1-1A0A0B4J248 108 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 LOC100131303A0A0U1RQF7 123 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 TEX46H3BTG2 121 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 SULT1A2P50226 295 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 MANBALQ9NQG1 85 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 IL36BQ9NZH7 164 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 GNG13Q9P2W3 67 aa13.81□□□□□ -0.2
NUP88-204ENST00000572290 GRIFINA4D1Z8 144 aa13.8□□□□□ -0.2
NUP88-204ENST00000572290 H3BVH4 76 aa13.8□□□□□ -0.2
NUP88-204ENST00000572290 PIK3CD-AS1Q5SR53 167 aa13.8□□□□□ -0.2
NUP88-204ENST00000572290 DNLZQ5SXM8 178 aa13.8□□□□□ -0.2
NUP88-204ENST00000572290 SLC25A29Q8N8R3 303 aa13.8□□□□□ -0.2
NUP88-204ENST00000572290 NHLRC2Q8NBF2 726 aa13.8□□□□□ -0.2
NUP88-204ENST00000572290 PKD1P98161 4303 aa13.8□□□□□ -0.2
NUP88-204ENST00000572290 TRBV6-4A0A1B0GX49 114 aa13.79□□□□□ -0.2
NUP88-204ENST00000572290 ARMS2P0C7Q2 107 aa13.79□□□□□ -0.2
NUP88-204ENST00000572290 TNP2Q05952 138 aa13.79□□□□□ -0.2
NUP88-204ENST00000572290 LINC01559Q495D7 138 aa13.79□□□□□ -0.2
NUP88-204ENST00000572290 SH2D6Q7Z4S9 175 aa13.79□□□□□ -0.2
NUP88-204ENST00000572290 BAGE2Q86Y30 109 aa13.79□□□□□ -0.2
NUP88-204ENST00000572290 PRADC1Q9BSG0 188 aa13.79□□□□□ -0.2
NUP88-204ENST00000572290 TMSB15BA0A087X1C1 80 aa13.78□□□□□ -0.2
NUP88-204ENST00000572290 A8MWV9 139 aa13.78□□□□□ -0.2
NUP88-204ENST00000572290 BTF3P20290 206 aaKnown RBP13.78□□□□□ -0.2
NUP88-204ENST00000572290 RHOHQ15669 191 aa13.78□□□□□ -0.2
NUP88-204ENST00000572290 PARLQ9H300 379 aa13.78□□□□□ -0.2
NUP88-204ENST00000572290 HERC2O95714 4834 aa13.77□□□□□ -0.2
NUP88-204ENST00000572290 MGST1P10620 155 aaKnown RBP13.77□□□□□ -0.21
NUP88-204ENST00000572290 SYT8Q8NBV8 401 aa13.77□□□□□ -0.21
NUP88-204ENST00000572290 MLST8Q9BVC4 326 aa13.77□□□□□ -0.21
NUP88-204ENST00000572290 DMRTA1Q5VZB9 504 aa13.76□□□□□ -0.21
NUP88-204ENST00000572290 ZFP2Q6ZN57 461 aa13.76□□□□□ -0.21
NUP88-204ENST00000572290 ZNF575Q86XF7 245 aa13.76□□□□□ -0.21
NUP88-204ENST00000572290 C9orf62Q8N4C0 152 aa13.76□□□□□ -0.21
NUP88-204ENST00000572290 C11orf52Q96A22 123 aa13.76□□□□□ -0.21
NUP88-204ENST00000572290 RPL35P42766 123 aaKnown RBP13.75□□□□□ -0.21
NUP88-204ENST00000572290 JPT2Q9H910 190 aa13.75□□□□□ -0.21
NUP88-204ENST00000572290 SCRT2Q9NQ03 307 aa13.75□□□□□ -0.21
NUP88-204ENST00000572290 PHLDA3Q9Y5J5 127 aa13.75□□□□□ -0.21
NUP88-204ENST00000572290 IFNA1P01562 189 aa13.74□□□□□ -0.21
NUP88-204ENST00000572290 TIRAPP58753 221 aa13.74□□□□□ -0.21
NUP88-204ENST00000572290 WFDC10BQ8IUB3 73 aa13.74□□□□□ -0.21
NUP88-204ENST00000572290 KRTAP17-1Q9BYP8 105 aa13.74□□□□□ -0.21
NUP88-204ENST00000572290 LY96Q9Y6Y9 160 aa13.74□□□□□ -0.21
NUP88-204ENST00000572290 TRAV9-2A0A087WT02 112 aa13.73□□□□□ -0.21
NUP88-204ENST00000572290 LINC00315P59091 139 aa13.73□□□□□ -0.21
NUP88-204ENST00000572290 PRR27Q6MZM9 219 aa13.73□□□□□ -0.21
NUP88-204ENST00000572290 SAMD10Q9BYL1 202 aa13.73□□□□□ -0.21
NUP88-204ENST00000572290 KIAA1109Q2LD37 5005 aa13.73□□□□□ -0.21
NUP88-204ENST00000572290 Q6ZSN1 163 aa13.72□□□□□ -0.21
NUP88-204ENST00000572290 DERL1Q9BUN8 251 aa13.72□□□□□ -0.21
NUP88-204ENST00000572290 M0R381 172 aa13.71□□□□□ -0.21
NUP88-204ENST00000572290 RHODO00212 210 aa13.71□□□□□ -0.21
NUP88-204ENST00000572290 CXCL1P09341 107 aa13.71□□□□□ -0.21
NUP88-204ENST00000572290 MED14OSP0DP75 135 aa13.71□□□□□ -0.21
NUP88-204ENST00000572290 RPL19P84098 196 aaKnown RBP13.71□□□□□ -0.21
NUP88-204ENST00000572290 MEF2BQ02080 365 aaPredicted RBP13.71□□□□□ -0.21
NUP88-204ENST00000572290 UFSP1Q6NVU6 142 aa13.71□□□□□ -0.21
NUP88-204ENST00000572290 ZFP82Q8N141 532 aa13.71□□□□□ -0.21
NUP88-204ENST00000572290 SFRP2Q96HF1 295 aa13.71□□□□□ -0.21
NUP88-204ENST00000572290 PKHD1P08F94 4074 aa13.7□□□□□ -0.22
NUP88-204ENST00000572290 PDE6DO43924 150 aa13.7□□□□□ -0.22
NUP88-204ENST00000572290 DNAH10OSP0CZ25 163 aa13.7□□□□□ -0.22
NUP88-204ENST00000572290 EVI2AP22794 236 aa13.7□□□□□ -0.22
NUP88-204ENST00000572290 K7EP13 123 aa13.69□□□□□ -0.22
NUP88-204ENST00000572290 BCL2P10415 239 aa13.69□□□□□ -0.22
NUP88-204ENST00000572290 CENPWQ5EE01 88 aa13.69□□□□□ -0.22
NUP88-204ENST00000572290 FAM74A4Q5TZK3 123 aa13.69□□□□□ -0.22
NUP88-204ENST00000572290 ATP6V0E2Q8NHE4 81 aa13.69□□□□□ -0.22
NUP88-204ENST00000572290 TRAV8-6A0A0B4J262 113 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 GAGE12JA6NER3 117 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 GAGE1Q13065 139 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 GAGE4Q13068 117 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 GAGE5Q13069 117 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 GAGE13Q4V321 117 aa13.68□□□□□ -0.22
NUP88-204ENST00000572290 GTSF1LQ9H1H1 148 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms