RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 ZNF575Q86XF7 245 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 SYT8Q8NBV8 401 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 OR4C5Q8NGB2 326 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 OCC1Q8TAD7 63 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 SMIM7Q9BQ49 75 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 XKRY2A2RUG3 117 aa15.43■□□□□ 0.06
CLN3-234ENST00000568472 P01737 135 aa15.43■□□□□ 0.06
CLN3-234ENST00000568472 HOXA5P20719 270 aa15.43■□□□□ 0.06
CLN3-234ENST00000568472 CLLU1Q5K131 121 aa15.43■□□□□ 0.06
CLN3-234ENST00000568472 SCRT2Q9NQ03 307 aa15.43■□□□□ 0.06
CLN3-234ENST00000568472 PHLDA3Q9Y5J5 127 aa15.43■□□□□ 0.06
CLN3-234ENST00000568472 PGPEP1LA6NFU8 196 aa15.42■□□□□ 0.06
CLN3-234ENST00000568472 ZNF727A8MUV8 499 aa15.42■□□□□ 0.06
CLN3-234ENST00000568472 H3BVH4 76 aa15.42■□□□□ 0.06
CLN3-234ENST00000568472 LGALS9CQ6DKI2 356 aa15.42■□□□□ 0.06
CLN3-234ENST00000568472 PRO0255Q9UI72 69 aa15.41■□□□□ 0.06
CLN3-234ENST00000568472 TRAV26-1A0A087WT03 109 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 TRGV4A0A0C4DH28 118 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 A8MWV9 139 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 IGHV3-53P01767 116 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 RPL19P84098 196 aaKnown RBP15.4■□□□□ 0.06
CLN3-234ENST00000568472 IFITM2Q01629 132 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 FHL2Q14192 279 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 OR2D3Q8NGH3 330 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 LINC00476Q8WZB0 136 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 HHLA3Q9XRX5 114 aa15.4■□□□□ 0.06
CLN3-234ENST00000568472 RS1O15537 224 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 OR5AL1P0C617 328 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 P0DMU3 169 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 FAM231AP0DMU4 169 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 FAM231CP0DMU5 169 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 ZFP82Q8N141 532 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 POM121L12Q8N7R1 296 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 NUDT10Q8NFP7 164 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 NUDT11Q96G61 164 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 ZNF479Q96JC4 524 aa15.39■□□□□ 0.05
CLN3-234ENST00000568472 SSBP4Q9BWG4 385 aaPredicted RBP15.39■□□□□ 0.05
CLN3-234ENST00000568472 PLECQ15149 4684 aaKnown RBP15.39■□□□□ 0.05
CLN3-234ENST00000568472 K7EN84 100 aa15.38■□□□□ 0.05
CLN3-234ENST00000568472 CFAP126Q5VTH2 177 aa15.38■□□□□ 0.05
CLN3-234ENST00000568472 PAX4O43316 350 aa15.37■□□□□ 0.05
CLN3-234ENST00000568472 SNAI2O43623 268 aa15.37■□□□□ 0.05
CLN3-234ENST00000568472 SRSF3P84103 164 aaKnown RBP15.37■□□□□ 0.05
CLN3-234ENST00000568472 TMEM241Q24JQ0 296 aa15.37■□□□□ 0.05
CLN3-234ENST00000568472 DMRTA1Q5VZB9 504 aa15.37■□□□□ 0.05
CLN3-234ENST00000568472 FAM231DQ6ZW35 169 aa15.37■□□□□ 0.05
CLN3-234ENST00000568472 C9JQL5 133 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 LY6G6CO95867 125 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 NUDT3O95989 172 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 SFTA3P0C7M3 94 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 CRYBA4P53673 196 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 SOHLH1Q5JUK2 328 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 ZFP2Q6ZN57 461 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 LINC01551Q86U37 167 aa15.36■□□□□ 0.05
CLN3-234ENST00000568472 A0A0J9YY99 117 aa15.35■□□□□ 0.05
CLN3-234ENST00000568472 A0A1W2PPQ1 181 aa15.35■□□□□ 0.05
CLN3-234ENST00000568472 F2Z2F3 143 aa15.35■□□□□ 0.05
CLN3-234ENST00000568472 VSIG2Q96IQ7 327 aa15.35■□□□□ 0.05
CLN3-234ENST00000568472 RPP21Q9H633 154 aaKnown RBP15.35■□□□□ 0.05
CLN3-234ENST00000568472 M0R381 172 aa15.34■□□□□ 0.05
CLN3-234ENST00000568472 NXPH4O95158 308 aa15.34■□□□□ 0.05
CLN3-234ENST00000568472 RNF212Q495C1 297 aa15.34■□□□□ 0.05
CLN3-234ENST00000568472 FER1L6-AS1Q8NA97 138 aa15.34■□□□□ 0.05
CLN3-234ENST00000568472 RNASE7Q9H1E1 156 aaKnown RBP15.34■□□□□ 0.05
CLN3-234ENST00000568472 NAT8Q9UHE5 227 aa15.34■□□□□ 0.05
CLN3-234ENST00000568472 RHODO00212 210 aa15.33■□□□□ 0.04
CLN3-234ENST00000568472 IGLC6P0CF74 106 aa15.33■□□□□ 0.04
CLN3-234ENST00000568472 ERVFC1-1P60608 527 aa15.33■□□□□ 0.04
CLN3-234ENST00000568472 SPANXN1Q5VSR9 72 aa15.33■□□□□ 0.04
CLN3-234ENST00000568472 SFRP2Q96HF1 295 aa15.33■□□□□ 0.04
CLN3-234ENST00000568472 KMT2CQ8NEZ4 4911 aaKnown RBP15.33■□□□□ 0.04
CLN3-234ENST00000568472 GATCO43716 136 aaKnown RBP15.32■□□□□ 0.04
CLN3-234ENST00000568472 GATA1P15976 413 aaPredicted RBP15.32■□□□□ 0.04
CLN3-234ENST00000568472 CT83Q5H943 113 aa15.32■□□□□ 0.04
CLN3-234ENST00000568472 ICOSQ9Y6W8 199 aa15.32■□□□□ 0.04
CLN3-234ENST00000568472 MUC4Q99102 2169 aa15.32■□□□□ 0.04
CLN3-234ENST00000568472 TRBV6-4A0A1B0GX49 114 aa15.31■□□□□ 0.04
CLN3-234ENST00000568472 A8MWL6 223 aa15.31■□□□□ 0.04
CLN3-234ENST00000568472 FAM3BP58499 235 aaPredicted RBP15.31■□□□□ 0.04
CLN3-234ENST00000568472 CACNG7P62955 275 aa15.31■□□□□ 0.04
CLN3-234ENST00000568472 MRPL23Q16540 153 aaKnown RBP15.31■□□□□ 0.04
CLN3-234ENST00000568472 OR10AG1Q8NH19 301 aa15.31■□□□□ 0.04
CLN3-234ENST00000568472 OSTCQ9NRP0 149 aa15.31■□□□□ 0.04
CLN3-234ENST00000568472 GZMBP10144 247 aa15.3■□□□□ 0.04
CLN3-234ENST00000568472 CCL18P55774 89 aa15.3■□□□□ 0.04
CLN3-234ENST00000568472 WDR73Q6P4I2 378 aa15.3■□□□□ 0.04
CLN3-234ENST00000568472 C15orf54Q8N8G6 183 aa15.3■□□□□ 0.04
CLN3-234ENST00000568472 TPPP3Q9BW30 176 aa15.3■□□□□ 0.04
CLN3-234ENST00000568472 SH2D6Q7Z4S9 175 aa15.29■□□□□ 0.04
CLN3-234ENST00000568472 LYSTQ99698 3801 aa15.29■□□□□ 0.04
CLN3-234ENST00000568472 PRADC1Q9BSG0 188 aa15.29■□□□□ 0.04
CLN3-234ENST00000568472 A0A096LPF7 62 aa15.28■□□□□ 0.04
CLN3-234ENST00000568472 RPL23P62829 140 aaKnown RBP15.28■□□□□ 0.04
CLN3-234ENST00000568472 RHOHQ15669 191 aa15.28■□□□□ 0.04
CLN3-234ENST00000568472 UFSP1Q6NVU6 142 aa15.28■□□□□ 0.04
CLN3-234ENST00000568472 UQCC3Q6UW78 93 aa15.28■□□□□ 0.04
CLN3-234ENST00000568472 UBE2DNLQ8IWF7 75 aa15.28■□□□□ 0.04
CLN3-234ENST00000568472 IGHV3-73A0A0B4J1V6 119 aa15.27■□□□□ 0.04
CLN3-234ENST00000568472 CRYGDP07320 174 aa15.27■□□□□ 0.04
CLN3-234ENST00000568472 SLC25A29Q8N8R3 303 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms