RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 IGLV2-18A0A075B6J9 118 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 IGKV3D-20A0A0C4DH25 116 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 IGHV4-28A0A0C4DH34 117 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 GRIFINA4D1Z8 144 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 C19orf71A6NCJ1 209 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 SMIM9A6NGZ8 99 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 GNRH2O43555 120 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 P01737 135 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 TYMSP04818 313 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 EMP1P54849 157 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 Q6ZR54 194 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 UBE2DNLQ8IWF7 75 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 KCNS1Q96KK3 526 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 NEU1Q99519 415 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 SEC11CQ9BY50 192 aa8.04□□□□□ -1.12
CLN3-226ENST00000567160 TMEM189A5PLL7 270 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 KRBOX1C9JBD0 128 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 MIFP14174 115 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 ERVFC1-1P60608 527 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 LINC01559Q495D7 138 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 IBA57Q5T440 356 aaKnown RBP8.03□□□□□ -1.12
CLN3-226ENST00000567160 Q8NAQ8 132 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 OR2D3Q8NGH3 330 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 ISOC2Q96AB3 205 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 LINC00467Q9BRT7 94 aa8.03□□□□□ -1.12
CLN3-226ENST00000567160 TRGV11A0A075B6L2 103 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 DEFB131BA0A096LNP1 70 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 GATCO43716 136 aaKnown RBP8.02□□□□□ -1.13
CLN3-226ENST00000567160 GZMBP10144 247 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 ZNF415Q09FC8 603 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 TDRG1Q3Y452 100 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 RNASE8Q8TDE3 154 aaKnown RBP8.02□□□□□ -1.13
CLN3-226ENST00000567160 TMEM263Q8WUH6 116 aaKnown RBP8.02□□□□□ -1.13
CLN3-226ENST00000567160 C16orf74Q96GX8 76 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 RPP21Q9H633 154 aaKnown RBP8.02□□□□□ -1.13
CLN3-226ENST00000567160 GSN-AS1Q9NRJ2 163 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 MDFICQ9P1T7 246 aa8.02□□□□□ -1.13
CLN3-226ENST00000567160 TIMM8BQ9Y5J9 83 aaPredicted RBP8.02□□□□□ -1.13
CLN3-226ENST00000567160 IGHV3-16A0A0C4DH30 117 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 SNURFLB1AK76 121 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 H3BVH4 76 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 S100A4P26447 101 aaKnown RBP8.01□□□□□ -1.13
CLN3-226ENST00000567160 ASIPP42127 132 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 PNRC1Q12796 327 aaPredicted RBP8.01□□□□□ -1.13
CLN3-226ENST00000567160 C10orf91Q5T1B1 145 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 ZNF493Q6ZR52 646 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 FAM231DQ6ZW35 169 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 C15orf54Q8N8G6 183 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 OR10G8Q8NGN5 311 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 SFRP2Q96HF1 295 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 OSTCQ9NRP0 149 aa8.01□□□□□ -1.13
CLN3-226ENST00000567160 CARHSP1Q9Y2V2 147 aaKnown RBP8.01□□□□□ -1.13
CLN3-226ENST00000567160 LRP1BQ9NZR2 4599 aa8□□□□□ -1.13
CLN3-226ENST00000567160 NACAE9PAV3 2078 aa8□□□□□ -1.13
CLN3-226ENST00000567160 PLAC8L1A1L4L8 177 aa8□□□□□ -1.13
CLN3-226ENST00000567160 EPM2AB3EWF7 344 aa8□□□□□ -1.13
CLN3-226ENST00000567160 APOC3P02656 99 aa8□□□□□ -1.13
CLN3-226ENST00000567160 RPS20P60866 119 aaKnown RBP8□□□□□ -1.13
CLN3-226ENST00000567160 C11orf72Q8NBR9 251 aa8□□□□□ -1.13
CLN3-226ENST00000567160 NOP10Q9NPE3 64 aaKnown RBP8□□□□□ -1.13
CLN3-226ENST00000567160 APOBP04114 4563 aaKnown RBP7.99□□□□□ -1.13
CLN3-226ENST00000567160 XKRY2A2RUG3 117 aa7.99□□□□□ -1.13
CLN3-226ENST00000567160 INAFM2P0DMQ5 153 aa7.99□□□□□ -1.13
CLN3-226ENST00000567160 TCL1AP56279 114 aa7.99□□□□□ -1.13
CLN3-226ENST00000567160 RNF212Q495C1 297 aa7.99□□□□□ -1.13
CLN3-226ENST00000567160 TPPP3Q9BW30 176 aa7.99□□□□□ -1.13
CLN3-226ENST00000567160 V9GYV3 84 aa7.99□□□□□ -1.13
CLN3-226ENST00000567160 MUC21A0A0G2JKD1 596 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 MUC21A0A140T8X8 626 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 A8MWL6 223 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 MT-ND4LP03901 98 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 CXCL1P09341 107 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 ARMS2P0C7Q2 107 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 RNASE3P12724 160 aaKnown RBP7.98□□□□□ -1.13
CLN3-226ENST00000567160 TNP2Q05952 138 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 FAM222AQ5U5X8 452 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 C9orf85Q96MD7 179 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 MRPL16Q9NX20 251 aaKnown RBP7.98□□□□□ -1.13
CLN3-226ENST00000567160 CELA1Q9UNI1 258 aa7.98□□□□□ -1.13
CLN3-226ENST00000567160 TRGV1A0A0A0MS02 117 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 SSTP61278 116 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 CT83Q5H943 113 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 DNLZQ5SXM8 178 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 FER1L6-AS1Q8NA97 138 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 CLRN3Q8NCR9 226 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 FAM210BQ96KR6 192 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 SPXQ9BT56 116 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 IL36BQ9NZH7 164 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 DKK2Q9UBU2 259 aa7.97□□□□□ -1.13
CLN3-226ENST00000567160 M0R2P5 195 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 PPP1R2P9O14990 202 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 IGLC6P0CF74 106 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 DEFB130BP0DP73 79 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 DEFB130AP0DP74 79 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 DAZ2Q13117 558 aaKnown RBP7.96□□□□□ -1.14
CLN3-226ENST00000567160 C12orf74Q32Q52 190 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 Q6ZTI0 123 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 SVBPQ8N300 66 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 OR10AG1Q8NH19 301 aa7.96□□□□□ -1.14
CLN3-226ENST00000567160 TSKUQ8WUA8 353 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms