RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ZFP30Q9Y2G7 519 aa14.1□□□□□ -0.15
CLN3-219ENST00000565778 TRBV6-4A0A1B0GX49 114 aa14.09□□□□□ -0.15
CLN3-219ENST00000565778 B4DEV8 164 aa14.09□□□□□ -0.15
CLN3-219ENST00000565778 K7EP13 123 aa14.09□□□□□ -0.15
CLN3-219ENST00000565778 ASIPP42127 132 aa14.09□□□□□ -0.15
CLN3-219ENST00000565778 UBE2G1P62253 170 aa14.09□□□□□ -0.15
CLN3-219ENST00000565778 ZNF345Q14585 488 aa14.09□□□□□ -0.15
CLN3-219ENST00000565778 LGALSLQ3ZCW2 172 aaPredicted RBP14.09□□□□□ -0.15
CLN3-219ENST00000565778 A0A0D9SG52 128 aa14.08□□□□□ -0.16
CLN3-219ENST00000565778 HMSDA8MTL9 139 aa14.08□□□□□ -0.16
CLN3-219ENST00000565778 KRTAP10-2P60368 255 aa14.08□□□□□ -0.16
CLN3-219ENST00000565778 RHOHQ15669 191 aa14.08□□□□□ -0.16
CLN3-219ENST00000565778 OR11H4Q8NGC9 324 aa14.08□□□□□ -0.16
CLN3-219ENST00000565778 SFT2D1Q8WV19 159 aa14.08□□□□□ -0.16
CLN3-219ENST00000565778 FMC1Q96HJ9 113 aa14.08□□□□□ -0.16
CLN3-219ENST00000565778 EREGO14944 169 aa14.07□□□□□ -0.16
CLN3-219ENST00000565778 SEC11BP0C7V7 166 aa14.07□□□□□ -0.16
CLN3-219ENST00000565778 DNAH10OSP0CZ25 163 aa14.07□□□□□ -0.16
CLN3-219ENST00000565778 CRIP1P50238 77 aa14.07□□□□□ -0.16
CLN3-219ENST00000565778 FAM213BQ8TBF2 198 aa14.07□□□□□ -0.16
CLN3-219ENST00000565778 ZC2HC1AQ96GY0 325 aa14.07□□□□□ -0.16
CLN3-219ENST00000565778 ZNF471Q9BX82 626 aaPredicted RBP14.07□□□□□ -0.16
CLN3-219ENST00000565778 MSRB1Q9NZV6 116 aa14.07□□□□□ -0.16
CLN3-219ENST00000565778 KANTRA0A1W2PQU2 76 aa14.06□□□□□ -0.16
CLN3-219ENST00000565778 M0R036 132 aa14.06□□□□□ -0.16
CLN3-219ENST00000565778 PAGE4O60829 102 aa14.06□□□□□ -0.16
CLN3-219ENST00000565778 CDK2AP2O75956 126 aa14.06□□□□□ -0.16
CLN3-219ENST00000565778 MGST1P10620 155 aaKnown RBP14.06□□□□□ -0.16
CLN3-219ENST00000565778 TIRAPP58753 221 aa14.06□□□□□ -0.16
CLN3-219ENST00000565778 TRAV8-6A0A0B4J262 113 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 IGHV3-38A0A0C4DH36 116 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 A0A1B0GV50 99 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 A8MWV9 139 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 UMAD1C9J7I0 102 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 KRBOX1C9JBD0 128 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 SH2D1AO60880 128 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 CRYGDP07320 174 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 ERVFC1-1P60608 527 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 FAM162BQ5T6X4 162 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 MBD3L1Q8WWY6 194 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 TCEAL7Q9BRU2 100 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 IL36BQ9NZH7 164 aa14.05□□□□□ -0.16
CLN3-219ENST00000565778 GRIFINA4D1Z8 144 aa14.04□□□□□ -0.16
CLN3-219ENST00000565778 OR10J3Q5JRS4 329 aa14.04□□□□□ -0.16
CLN3-219ENST00000565778 PIK3CD-AS1Q5SR53 167 aa14.04□□□□□ -0.16
CLN3-219ENST00000565778 COX8CQ7Z4L0 72 aa14.04□□□□□ -0.16
CLN3-219ENST00000565778 ATP6V0E2Q8NHE4 81 aa14.04□□□□□ -0.16
CLN3-219ENST00000565778 PARLQ9H300 379 aa14.04□□□□□ -0.16
CLN3-219ENST00000565778 PGPEP1Q9NXJ5 209 aa14.04□□□□□ -0.16
CLN3-219ENST00000565778 TRBV6-1A0A0K0K1D8 114 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 H3BVH4 76 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 BCL2L11O43521 198 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 ARMS2P0C7Q2 107 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 AKR1C3P42330 323 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 EIF5AP63241 154 aaKnown RBP14.03□□□□□ -0.16
CLN3-219ENST00000565778 DMRTA1Q5VZB9 504 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 ZFP2Q6ZN57 461 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 Q6ZSN1 163 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 C10orf126Q8N4M7 172 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 SYT8Q8NBV8 401 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 JPT2Q9H910 190 aa14.03□□□□□ -0.16
CLN3-219ENST00000565778 PCLOQ9Y6V0 5065 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 TMSB15BA0A087X1C1 80 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 PFDN1O60925 122 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 LTAP01374 205 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 H2AFB1P0C5Y9 115 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 ZNF674Q2M3X9 581 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 DNLZQ5SXM8 178 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 GTSF1LQ9H1H1 148 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 BOLA1Q9Y3E2 137 aa14.01□□□□□ -0.17
CLN3-219ENST00000565778 GAGE12JA6NER3 117 aa14□□□□□ -0.17
CLN3-219ENST00000565778 GAGE1Q13065 139 aa14□□□□□ -0.17
CLN3-219ENST00000565778 GAGE4Q13068 117 aa14□□□□□ -0.17
CLN3-219ENST00000565778 GAGE5Q13069 117 aa14□□□□□ -0.17
CLN3-219ENST00000565778 GAGE13Q4V321 117 aa14□□□□□ -0.17
CLN3-219ENST00000565778 LINC01556Q5JQF7 62 aa14□□□□□ -0.17
CLN3-219ENST00000565778 LELP1Q5T871 98 aa14□□□□□ -0.17
CLN3-219ENST00000565778 TMUB2Q71RG4 321 aa14□□□□□ -0.17
CLN3-219ENST00000565778 SAMD10Q9BYL1 202 aa14□□□□□ -0.17
CLN3-219ENST00000565778 PHLDA3Q9Y5J5 127 aa14□□□□□ -0.17
CLN3-219ENST00000565778 A0A087WTM6 91 aa13.99□□□□□ -0.17
CLN3-219ENST00000565778 S100A9P06702 114 aaKnown RBP13.99□□□□□ -0.17
CLN3-219ENST00000565778 TPT1P13693 172 aaKnown RBP13.99□□□□□ -0.17
CLN3-219ENST00000565778 FUSP35637 526 aaKnown RBP eCLIP13.99□□□□□ -0.17
CLN3-219ENST00000565778 MAPKAPK5-AS1Q8N8E1 139 aa13.99□□□□□ -0.17
CLN3-219ENST00000565778 IGHV3-30P01768 117 aa13.98□□□□□ -0.17
CLN3-219ENST00000565778 IGHV3-33P01772 117 aa13.98□□□□□ -0.17
CLN3-219ENST00000565778 IGHV3-30-3P0DP02 117 aa13.98□□□□□ -0.17
CLN3-219ENST00000565778 IGHV3-30-5P0DP03 117 aa13.98□□□□□ -0.17
CLN3-219ENST00000565778 SCO2A0A1W2PP80 73 aa13.97□□□□□ -0.17
CLN3-219ENST00000565778 LINC01559Q495D7 138 aa13.97□□□□□ -0.17
CLN3-219ENST00000565778 FAM74A4Q5TZK3 123 aa13.97□□□□□ -0.17
CLN3-219ENST00000565778 UFSP1Q6NVU6 142 aa13.97□□□□□ -0.17
CLN3-219ENST00000565778 BAGE2Q86Y30 109 aa13.97□□□□□ -0.17
CLN3-219ENST00000565778 KRTAP4-5Q9BYR2 181 aa13.97□□□□□ -0.17
CLN3-219ENST00000565778 RYR1P21817 5038 aa13.97□□□□□ -0.17
CLN3-219ENST00000565778 IBA57-AS1B1ANH7 110 aa13.96□□□□□ -0.17
CLN3-219ENST00000565778 M0R381 172 aa13.96□□□□□ -0.17
CLN3-219ENST00000565778 RHODO00212 210 aa13.96□□□□□ -0.17
CLN3-219ENST00000565778 PSCAO43653 123 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms