RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 IGLV2-14P01704 120 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 RPL35AP18077 110 aaKnown RBP4.89□□□□□ -1.63
CLK3-212ENST00000563418 IGHV1-3A0A0C4DH29 117 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 LOC107984640A0A0U1RRK4 108 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 B9A039 149 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 NDUFB1O75438 58 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 EIF4EBP1Q13541 118 aaPredicted RBP4.89□□□□□ -1.63
CLK3-212ENST00000563418 MPLKIPQ8TAP9 179 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 GATA4P43694 442 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 FOXE3Q13461 319 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 HIST2H2BCQ6DN03 193 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 HIST2H2BDQ6DRA6 164 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 IGKV1D-17A0A075B6S4 117 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 TRAV23DV6A0A075B6W5 121 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 IGHV1-58A0A0C4DH39 117 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 IGHV1-8P0DP01 117 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 C6orf226Q5I0X4 101 aa4.89□□□□□ -1.63
CLK3-212ENST00000563418 SP5Q6BEB4 398 aaPredicted RBP4.88□□□□□ -1.63
CLK3-212ENST00000563418 WFDC9Q8NEX5 89 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 Q9H8V8 135 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 GATA3P23771 443 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 UBE2E1P51965 193 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 IGHV3-66A0A0C4DH42 116 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 PLCE1Q9P212 2302 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 F8WEM9 126 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 PLXNB1O43157 2135 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 TRAV7A0A075B6U4 112 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 H7C423 109 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 PROP1O75360 226 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 C9orf85Q96MD7 179 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 C14orf132Q9NPU4 83 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 A0A087WWL8 130 aa4.88□□□□□ -1.63
CLK3-212ENST00000563418 IGKV3OR2-268A0A0C4DH90 116 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 ZNF134P52741 427 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 DOCK10Q96BY6 2186 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 MLANAQ16655 118 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 IGHV3OR16-13A0A075B7E8 117 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 IGHV3-74A0A0B4J1X5 117 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 IGHV3-23P01764 117 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 IGHV1-2P23083 117 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 C1orf53Q5VUE5 145 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 PLA2G2FQ9BZM2 168 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 TMEM263Q8WUH6 116 aaKnown RBP4.87□□□□□ -1.63
CLK3-212ENST00000563418 RFPL3SP0C7P2 107 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 RSPO1Q2MKA7 263 aaPredicted RBP4.87□□□□□ -1.63
CLK3-212ENST00000563418 ASPHD1Q5U4P2 390 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 Q6ZQT7 251 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 C3orf36Q3SXR2 165 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 C5orf38Q86SI9 138 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 C1orf159Q96HA4 380 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 SIT1Q9Y3P8 196 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 NDUFS5O43920 106 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 OPRPNQ99935 248 aaPredicted RBP4.87□□□□□ -1.63
CLK3-212ENST00000563418 S4R3C0 116 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 IGF2-ASQ6U949 168 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 HHLA3Q9XRX5 114 aa4.87□□□□□ -1.63
CLK3-212ENST00000563418 ABCA1O95477 2261 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 C17orf100A8MU93 164 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 C5orf67F2Z3F1 127 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 MAPKAPK5-AS1Q8N8E1 139 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 AJUBAQ96IF1 538 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 GAFA1Q96PS6 74 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 SPTSSBQ8NFR3 76 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 LOXL1Q08397 574 aaPredicted RBP4.86□□□□□ -1.63
CLK3-212ENST00000563418 IGHV3-35A0A0C4DH35 117 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 DPH3Q96FX2 82 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 USMG5Q96IX5 58 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 LINC01587Q99440 93 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 ZNF576Q9H609 170 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 MINOS1Q5TGZ0 78 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 C11orf44Q8N8P7 122 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 MINOS1-NBL1R4GNA1 71 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 DSCAML1Q8TD84 2053 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 TNCP24821 2201 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 BUB1B-PAK6H3BSN5 160 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 IGLV3-19P01714 112 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 SS18Q15532 418 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 ZNF491Q8N8L2 437 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 SND1-IT1Q9HBX3 110 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 WISP1O95388 367 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 CCL3L1P16619 93 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 LINC00205P59089 165 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 HOXD3P31249 432 aaPredicted RBP4.86□□□□□ -1.63
CLK3-212ENST00000563418 PRO0461Q9UI25 63 aa4.86□□□□□ -1.63
CLK3-212ENST00000563418 COL4A4P53420 1690 aaPredicted RBP4.85□□□□□ -1.63
CLK3-212ENST00000563418 COL8A2P25067 703 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 MYCNOSP40205 109 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 GFRALQ6UXV0 394 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 PATE2Q6UY27 113 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 ARHGAP32A7KAX9 2087 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 IGHV3-49A0A0A0MS15 119 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 IGHV3-30-3P0DP02 117 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 MBD3L4A6NDZ8 208 aaPredicted RBP4.85□□□□□ -1.63
CLK3-212ENST00000563418 MBD3L3A6NE82 208 aaPredicted RBP4.85□□□□□ -1.63
CLK3-212ENST00000563418 MBD3L5A6NJ08 208 aaPredicted RBP4.85□□□□□ -1.63
CLK3-212ENST00000563418 TEX22C9J3V5 150 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 BCE1O60756 84 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 SPTBN1Q01082 2364 aaKnown RBP4.85□□□□□ -1.63
CLK3-212ENST00000563418 C17orf58Q2M2W7 97 aa4.85□□□□□ -1.63
CLK3-212ENST00000563418 CNFNQ9BYD5 112 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms