RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ADAMTSL5Q6ZMM2 481 aa7□□□□□ -1.29
VPS39-205ENST00000562258 TRBV9A0A0B4J1U6 114 aa7□□□□□ -1.29
VPS39-205ENST00000562258 SPART-AS1P0CW21 52 aa7□□□□□ -1.29
VPS39-205ENST00000562258 IGHV3-64A0A075B6Q5 118 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 PLP1P60201 277 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 TMEM70Q9BUB7 260 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 PLA2G2EQ9NZK7 142 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 ZANQ9Y493 2812 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 ASPMQ8IZT6 3477 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 TRAV25A0A0B4J276 109 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 TRAV8-6A0A0B4J262 113 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 IGLV1-40P01703 118 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 CXCL1P09341 107 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 KIR3DS1Q14943 382 aa6.99□□□□□ -1.29
VPS39-205ENST00000562258 HIVEP1P15822 2718 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 A0A1B0GW15 77 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 KLF5Q13887 457 aaPredicted RBP6.98□□□□□ -1.29
VPS39-205ENST00000562258 CLPSL2Q6UWE3 100 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 Q8N1Y9 231 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 A0A0J9YX75 114 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 IGLL5B9A064 214 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 KRTAP24-1Q3LI83 254 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 MRPL53Q96EL3 112 aaKnown RBP6.98□□□□□ -1.29
VPS39-205ENST00000562258 Q9HAA7 133 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 CYSLTR1Q9Y271 337 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.98□□□□□ -1.29
VPS39-205ENST00000562258 PPBPP02775 128 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 PRM2P04554 102 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 NIPBLQ6KC79 2804 aaeCLIP6.98□□□□□ -1.29
VPS39-205ENST00000562258 MRAP2Q96G30 205 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 MSRB1Q9NZV6 116 aa6.98□□□□□ -1.29
VPS39-205ENST00000562258 K7EQG2 157 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 SERF1AO75920 110 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 GAGE6Q13070 117 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 GDF5OSQ5U4N7 250 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 C2orf88Q9BSF0 95 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 ZFAND3Q9H8U3 227 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 A8MWV9 139 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 SNAI2O43623 268 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 IGLC2P0DOY2 106 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 IFITM10A6NMD0 228 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 ADCYAP1P18509 176 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 SIGLEC8Q9NYZ4 499 aa6.97□□□□□ -1.29
VPS39-205ENST00000562258 A0A087WWC5 75 aa6.96□□□□□ -1.29
VPS39-205ENST00000562258 H7C2G1 150 aa6.96□□□□□ -1.29
VPS39-205ENST00000562258 RHODO00212 210 aa6.96□□□□□ -1.29
VPS39-205ENST00000562258 LINC00614P0C842 121 aa6.96□□□□□ -1.29
VPS39-205ENST00000562258 HNRNPA3P51991 378 aaKnown RBP6.96□□□□□ -1.29
VPS39-205ENST00000562258 TMEM97Q5BJF2 176 aa6.96□□□□□ -1.29
VPS39-205ENST00000562258 OR5A1Q8NGJ0 315 aa6.96□□□□□ -1.29
VPS39-205ENST00000562258 MDFICQ9P1T7 246 aa6.96□□□□□ -1.29
VPS39-205ENST00000562258 NDUFA7O95182 113 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 PROK1P58294 105 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 RNF151Q2KHN1 245 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 SDHAF1A6NFY7 115 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 H3BMM0 161 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 M0R2P5 195 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 VCYO14598 125 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 ATP5G1P05496 136 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 SCGB1C2P0DMR2 95 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 MORN3Q6PF18 240 aaPredicted RBP6.96□□□□□ -1.3
VPS39-205ENST00000562258 ARL6IP6Q8N6S5 226 aa6.96□□□□□ -1.3
VPS39-205ENST00000562258 LAMA5O15230 3695 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 ATP5LO75964 103 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 NXT2Q9NPJ8 142 aaKnown RBP6.95□□□□□ -1.3
VPS39-205ENST00000562258 LGALS9O00182 355 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 VAMP3Q15836 100 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 Q6ZQT7 251 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 NIT1Q86X76 327 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 TMEM256Q8N2U0 113 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 ZNF503Q96F45 646 aa6.95□□□□□ -1.3
VPS39-205ENST00000562258 PRSS46E5RG02 174 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 HLA-DRB4P13762 266 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 GYPEP15421 78 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 LGALS3P17931 250 aaKnown RBP6.94□□□□□ -1.3
VPS39-205ENST00000562258 CFAP161Q6P656 301 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 ZNF493Q6ZR52 646 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 LINC00469Q8N7U9 141 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 SPXQ9BT56 116 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 C11orf1Q9H5F2 150 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 HLA-DRB4X5D2U9 266 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 ANGP03950 147 aaKnown RBP6.94□□□□□ -1.3
VPS39-205ENST00000562258 OR2K2Q8NGT1 345 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 C20orf173Q96LM9 149 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 JPT2Q9H910 190 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 GATA1P15976 413 aaPredicted RBP6.94□□□□□ -1.3
VPS39-205ENST00000562258 RNASE13Q5GAN3 156 aaKnown RBP6.94□□□□□ -1.3
VPS39-205ENST00000562258 LY96Q9Y6Y9 160 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 K7EN84 100 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 TNFRSF6BO95407 300 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 FAM222AQ5U5X8 452 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 OR13C6PQ8NH95 151 aa6.94□□□□□ -1.3
VPS39-205ENST00000562258 APCP25054 2843 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 LTAP01374 205 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 ORMDL2Q53FV1 153 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 RASL11AQ6T310 242 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 C11orf45Q8TAV5 145 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 C11orf52Q96A22 123 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 GNB1LQ9BYB4 327 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 TMEM242Q9NWH2 141 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 184.2 ms