RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GZMBP10144 247 aa15.34■□□□□ 0.05
SNX1-210ENST00000560260 HOXA5P20719 270 aa15.34■□□□□ 0.05
SNX1-210ENST00000560260 FAM74A3Q4VXF1 159 aa15.34■□□□□ 0.05
SNX1-210ENST00000560260 POM121L12Q8N7R1 296 aa15.34■□□□□ 0.05
SNX1-210ENST00000560260 DAZAP1Q96EP5 407 aaKnown RBP15.34■□□□□ 0.05
SNX1-210ENST00000560260 KMT2CQ8NEZ4 4911 aaKnown RBP15.34■□□□□ 0.05
SNX1-210ENST00000560260 TENM2Q9NT68 2774 aa15.33■□□□□ 0.05
SNX1-210ENST00000560260 IGHV3-53P01767 116 aa15.33■□□□□ 0.04
SNX1-210ENST00000560260 SFTA3P0C7M3 94 aa15.33■□□□□ 0.04
SNX1-210ENST00000560260 RPL23P62829 140 aaKnown RBP15.33■□□□□ 0.04
SNX1-210ENST00000560260 SOHLH1Q5JUK2 328 aa15.33■□□□□ 0.04
SNX1-210ENST00000560260 ALMS1Q8TCU4 4167 aa15.33■□□□□ 0.04
SNX1-210ENST00000560260 TMEM241Q24JQ0 296 aa15.32■□□□□ 0.04
SNX1-210ENST00000560260 ZNF876PQ49A33 203 aa15.32■□□□□ 0.04
SNX1-210ENST00000560260 COMMD7Q86VX2 200 aa15.32■□□□□ 0.04
SNX1-210ENST00000560260 PTH2Q96A98 100 aa15.32■□□□□ 0.04
SNX1-210ENST00000560260 LINC00862A6NCI5 91 aa15.31■□□□□ 0.04
SNX1-210ENST00000560260 MED14OSP0DP75 135 aa15.31■□□□□ 0.04
SNX1-210ENST00000560260 FAM231DQ6ZW35 169 aa15.31■□□□□ 0.04
SNX1-210ENST00000560260 RPP21Q9H633 154 aaKnown RBP15.31■□□□□ 0.04
SNX1-210ENST00000560260 NAT8Q9UHE5 227 aa15.31■□□□□ 0.04
SNX1-210ENST00000560260 NACAE9PAV3 2078 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 IGLL5B9A064 214 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 F5H768 121 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 SNAI2O43623 268 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 IGLC6P0CF74 106 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 ISOC2Q96AB3 205 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 ZNF479Q96JC4 524 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 KLK5Q9Y337 293 aaPredicted RBP15.3■□□□□ 0.04
SNX1-210ENST00000560260 VPS13DQ5THJ4 4388 aa15.3■□□□□ 0.04
SNX1-210ENST00000560260 RPS20P60866 119 aaKnown RBP15.29■□□□□ 0.04
SNX1-210ENST00000560260 ADIRFQ15847 76 aa15.29■□□□□ 0.04
SNX1-210ENST00000560260 DMRTA1Q5VZB9 504 aa15.29■□□□□ 0.04
SNX1-210ENST00000560260 TMEM88Q6PEY1 159 aa15.29■□□□□ 0.04
SNX1-210ENST00000560260 OR10AG1Q8NH19 301 aa15.29■□□□□ 0.04
SNX1-210ENST00000560260 SSBP4Q9BWG4 385 aaPredicted RBP15.29■□□□□ 0.04
SNX1-210ENST00000560260 IGHV4-4A0A075B6R2 117 aa15.28■□□□□ 0.04
SNX1-210ENST00000560260 TRAV4A0A0B4J268 109 aa15.28■□□□□ 0.04
SNX1-210ENST00000560260 JPT2Q9H910 190 aa15.28■□□□□ 0.04
SNX1-210ENST00000560260 MUC21A0A0G2JKD1 596 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 MUC21A0A140T8X8 626 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 RS1O15537 224 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 GATCO43716 136 aaKnown RBP15.27■□□□□ 0.04
SNX1-210ENST00000560260 NXPH4O95158 308 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 OR5AL1P0C617 328 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 ADCYAP1P18509 176 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 ERVFC1-1P60608 527 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 UQCC3Q6UW78 93 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 APLNQ9ULZ1 77 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 PHLDA3Q9Y5J5 127 aa15.27■□□□□ 0.04
SNX1-210ENST00000560260 M0R381 172 aa15.26■□□□□ 0.03
SNX1-210ENST00000560260 FHL2Q14192 279 aa15.26■□□□□ 0.03
SNX1-210ENST00000560260 CFAP126Q5VTH2 177 aa15.26■□□□□ 0.03
SNX1-210ENST00000560260 FER1L6-AS1Q8NA97 138 aa15.26■□□□□ 0.03
SNX1-210ENST00000560260 NDUFAF3Q9BU61 184 aa15.26■□□□□ 0.03
SNX1-210ENST00000560260 OSTCQ9NRP0 149 aa15.26■□□□□ 0.03
SNX1-210ENST00000560260 LYSTQ99698 3801 aa15.26■□□□□ 0.03
SNX1-210ENST00000560260 PIK3CD-AS1Q5SR53 167 aa15.25■□□□□ 0.03
SNX1-210ENST00000560260 OR4C5Q8NGB2 326 aa15.25■□□□□ 0.03
SNX1-210ENST00000560260 ZFP82Q8N141 532 aa15.24■□□□□ 0.03
SNX1-210ENST00000560260 GTSF1Q8WW33 167 aa15.24■□□□□ 0.03
SNX1-210ENST00000560260 TPPP3Q9BW30 176 aa15.24■□□□□ 0.03
SNX1-210ENST00000560260 SAMD10Q9BYL1 202 aa15.24■□□□□ 0.03
SNX1-210ENST00000560260 V9GYV3 84 aa15.24■□□□□ 0.03
SNX1-210ENST00000560260 RYR2Q92736 4967 aa15.24■□□□□ 0.03
SNX1-210ENST00000560260 TRAV26-1A0A087WT03 109 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 A0A0J9YY99 117 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 TMEM218A2RU14 115 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 XKRY2A2RUG3 117 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 SYT8Q8NBV8 401 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 SFRP2Q96HF1 295 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 VSIG2Q96IQ7 327 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 FAM210BQ96KR6 192 aa15.23■□□□□ 0.03
SNX1-210ENST00000560260 IGHV3-73A0A0B4J1V6 119 aa15.22■□□□□ 0.03
SNX1-210ENST00000560260 CTRLP40313 264 aa15.22■□□□□ 0.03
SNX1-210ENST00000560260 CT83Q5H943 113 aa15.22■□□□□ 0.03
SNX1-210ENST00000560260 LYZL1Q6UWQ5 148 aa15.22■□□□□ 0.03
SNX1-210ENST00000560260 HYDINQ4G0P3 5121 aa15.21■□□□□ 0.03
SNX1-210ENST00000560260 UFSP1Q6NVU6 142 aa15.21■□□□□ 0.03
SNX1-210ENST00000560260 TRGV4A0A0C4DH28 118 aa15.2■□□□□ 0.02
SNX1-210ENST00000560260 A8MWV9 139 aa15.2■□□□□ 0.02
SNX1-210ENST00000560260 SSTP61278 116 aa15.2■□□□□ 0.02
SNX1-210ENST00000560260 A0A1W2PPQ1 181 aa15.19■□□□□ 0.02
SNX1-210ENST00000560260 A8MWL6 223 aa15.19■□□□□ 0.02
SNX1-210ENST00000560260 GATA1P15976 413 aaPredicted RBP15.19■□□□□ 0.02
SNX1-210ENST00000560260 CRYBA4P53673 196 aa15.19■□□□□ 0.02
SNX1-210ENST00000560260 SPANXN1Q5VSR9 72 aa15.19■□□□□ 0.02
SNX1-210ENST00000560260 C15orf54Q8N8G6 183 aa15.19■□□□□ 0.02
SNX1-210ENST00000560260 OR10G8Q8NGN5 311 aa15.19■□□□□ 0.02
SNX1-210ENST00000560260 MSRB1Q9NZV6 116 aa15.19■□□□□ 0.02
SNX1-210ENST00000560260 A0A087WWL8 130 aa15.18■□□□□ 0.02
SNX1-210ENST00000560260 CRYGDP07320 174 aa15.18■□□□□ 0.02
SNX1-210ENST00000560260 TCTAP57738 103 aa15.18■□□□□ 0.02
SNX1-210ENST00000560260 Q6ZSN1 163 aa15.18■□□□□ 0.02
SNX1-210ENST00000560260 PRO0255Q9UI72 69 aa15.18■□□□□ 0.02
SNX1-210ENST00000560260 F8W036 122 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 TSKUQ8WUA8 353 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 CNFNQ9BYD5 112 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 HHLA3Q9XRX5 114 aa15.17■□□□□ 0.02
SNX1-210ENST00000560260 RYR3Q15413 4870 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms