RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DAZAP1Q96EP5 407 aaKnown RBP6.64□□□□□ -1.35
LDLR-211ENST00000560173 NOP10Q9NPE3 64 aaKnown RBP6.64□□□□□ -1.35
LDLR-211ENST00000560173 TIMM8BQ9Y5J9 83 aaPredicted RBP6.64□□□□□ -1.35
LDLR-211ENST00000560173 IGHV4-4A0A075B6R2 117 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 IGHV1OR15-1A0A075B7D0 117 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 CBY3A6NI87 242 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 IGLL5B9A064 214 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 K7EN84 100 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 GATCO43716 136 aaKnown RBP6.63□□□□□ -1.35
LDLR-211ENST00000560173 IGLV2-11P01706 119 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 TYMSP04818 313 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 DEFB130BP0DP73 79 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 DEFB130AP0DP74 79 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 TMEM183AQ8IXX5 376 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 LINC00612Q8N6U2 182 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 SGK494Q96LW2 274 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 NDFIP1Q9BT67 221 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 APLNQ9ULZ1 77 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 PSG8Q9UQ74 426 aa6.63□□□□□ -1.35
LDLR-211ENST00000560173 TGIF2-C20orf24A0A0A6YYL0 155 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 A0A1W2PPQ1 181 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 FAM231BA6NCW3 169 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 PGPEP1LA6NFU8 196 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 SNURFLB1AK76 121 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 IGLV2-8P01709 118 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 HTN3P15516 51 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 DAZ2Q13117 558 aaKnown RBP6.62□□□□□ -1.35
LDLR-211ENST00000560173 RASL11AQ6T310 242 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 Q86TA4 180 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 MLST8Q9BVC4 326 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 GSN-AS1Q9NRJ2 163 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 TP53TG3Q9ULZ0 132 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 DNAH6Q9C0G6 4158 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 KMT2AQ03164 3969 aa6.62□□□□□ -1.35
LDLR-211ENST00000560173 TRAV34A0A0B4J273 112 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 XKRY2A2RUG3 117 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 PRSS47A8MTI9 375 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 A8MWL6 223 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 P01737 135 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 MT-ND6P03923 174 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 CXCL1P09341 107 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 TCL1AP56279 114 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 MUC21Q5SSG8 566 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 WDR73Q6P4I2 378 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 PRNTQ86SH4 94 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 LINC00479Q96M42 142 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 GFRA4Q9GZZ7 299 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 V9GYV3 84 aa6.61□□□□□ -1.35
LDLR-211ENST00000560173 TRAV21A0A0B4J279 112 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 SMIM27A0A1W2PRY6 76 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 LY6G6CO95867 125 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 ATP5G1P05496 136 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 ZNF80P51504 273 aaPredicted RBP6.6□□□□□ -1.35
LDLR-211ENST00000560173 ZNF415Q09FC8 603 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 OR5I1Q13606 314 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 TDRG1Q3Y452 100 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 LGALS9CQ6DKI2 356 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 Q6ZTI0 123 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 COX8CQ7Z4L0 72 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 TSKUQ8WUA8 353 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 C8orf49Q96NF6 230 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 NDUFAF3Q9BU61 184 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 RPP21Q9H633 154 aaKnown RBP6.6□□□□□ -1.35
LDLR-211ENST00000560173 NAT8BQ9UHF3 227 aa6.6□□□□□ -1.35
LDLR-211ENST00000560173 TRGV11A0A075B6L2 103 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 TRGV1A0A0A0MS02 117 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 GAGE12BA1L429 117 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 SPINK4O60575 86 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 GAGE7O76087 117 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 GAGE12FP0CL80 117 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 GAGE12GP0CL81 117 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 GAGE12IP0CL82 117 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 RPS20P60866 119 aaKnown RBP6.59□□□□□ -1.35
LDLR-211ENST00000560173 SMUG1Q53HV7 270 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 PRR27Q6MZM9 219 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 FAM159AQ6UWV7 190 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 ATP5L2Q7Z4Y8 100 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 NUDT10Q8NFP7 164 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 NUDT11Q96G61 164 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 RNASE7Q9H1E1 156 aaKnown RBP6.59□□□□□ -1.35
LDLR-211ENST00000560173 MDFICQ9P1T7 246 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 NAGKQ9UJ70 344 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 RYR1P21817 5038 aa6.59□□□□□ -1.35
LDLR-211ENST00000560173 MUC4Q99102 2169 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 IGHV3-16A0A0C4DH30 117 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 LOC105371267A0A1B0GV96 52 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 C19orf71A6NCJ1 209 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 F5H768 121 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 S100A8P05109 93 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 C18orf15Q96N68 181 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 GNB1LQ9BYB4 327 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 C11orf21Q9P2W6 132 aa6.58□□□□□ -1.36
LDLR-211ENST00000560173 TRGV2A0A075B6R0 118 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 A0A1B0GW15 77 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 GNRH2O43555 120 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 HLA-DQA1P01909 254 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 TRGC2P03986 189 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 HOXA5P20719 270 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 LGALS9BQ3B8N2 356 aa6.57□□□□□ -1.36
LDLR-211ENST00000560173 FAM162BQ5T6X4 162 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms