RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MPC2O95563 127 aa6.1□□□□□ -1.43
HDDC3-204ENST00000559834 S100A1P23297 94 aa6.1□□□□□ -1.43
HDDC3-204ENST00000559834 OR10G9Q8NGN4 311 aa6.1□□□□□ -1.43
HDDC3-204ENST00000559834 OR10G7Q8NGN6 311 aa6.1□□□□□ -1.43
HDDC3-204ENST00000559834 DEFB104AQ8WTQ1 72 aa6.1□□□□□ -1.43
HDDC3-204ENST00000559834 A0A087WWC5 75 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 PGPEP1LA6NFU8 196 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 KRTAP29-1A8MX34 341 aaPredicted RBP6.09□□□□□ -1.43
HDDC3-204ENST00000559834 GGTLC3B5MD39 225 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 SEC11BP0C7V7 166 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 H2BFSP57053 126 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 GNG5P63218 68 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 SAPCD1Q5SSQ6 148 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 DPPA3Q6W0C5 159 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 C5orf17Q8NAS9 161 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 RMI2Q96E14 147 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 SGK494Q96LW2 274 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 C9orf85Q96MD7 179 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 PSG8Q9UQ74 426 aa6.09□□□□□ -1.43
HDDC3-204ENST00000559834 A8MWV9 139 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 G3V3Q6 166 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 HMGB3O15347 200 aaKnown RBP6.08□□□□□ -1.44
HDDC3-204ENST00000559834 EIF3GO75821 320 aaKnown RBP eCLIP6.08□□□□□ -1.44
HDDC3-204ENST00000559834 GCGP01275 180 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 TCRAP04437 139 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 S100A4P26447 101 aaKnown RBP6.08□□□□□ -1.44
HDDC3-204ENST00000559834 FGF8P55075 233 aaPredicted RBP6.08□□□□□ -1.44
HDDC3-204ENST00000559834 SMUG1Q53HV7 270 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 ZNF506Q5JVG8 444 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 PIK3CD-AS1Q5SR53 167 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 ZFP2Q6ZN57 461 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 Q6ZSA8 131 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 LINC00528Q8N1L1 170 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 Q8N976 141 aa6.08□□□□□ -1.44
HDDC3-204ENST00000559834 GAGE12JA6NER3 117 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 RBFOX3A6NFN3 312 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 ARL14EPLP0DKL9 152 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 RNASE3P12724 160 aaKnown RBP6.07□□□□□ -1.44
HDDC3-204ENST00000559834 CDC34P49427 236 aaPredicted RBP6.07□□□□□ -1.44
HDDC3-204ENST00000559834 ZNF80P51504 273 aaPredicted RBP6.07□□□□□ -1.44
HDDC3-204ENST00000559834 RAB2AP61019 212 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 SUMO1P63165 101 aaKnown RBP6.07□□□□□ -1.44
HDDC3-204ENST00000559834 FLI1Q01543 452 aaPredicted RBP6.07□□□□□ -1.44
HDDC3-204ENST00000559834 GAGE1Q13065 139 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 GAGE4Q13068 117 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 GAGE5Q13069 117 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 LGALSLQ3ZCW2 172 aaPredicted RBP6.07□□□□□ -1.44
HDDC3-204ENST00000559834 GAGE13Q4V321 117 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 PRNTQ86SH4 94 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 OR11H4Q8NGC9 324 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 WFDC1Q9HC57 220 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 C11orf21Q9P2W6 132 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 EPDR1Q9UM22 224 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 URGCP-MRPS24S4R325 110 aa6.07□□□□□ -1.44
HDDC3-204ENST00000559834 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.06□□□□□ -1.44
HDDC3-204ENST00000559834 FABP5P3A8MUU1 101 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 MBP02144 154 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 GIPP09681 153 aaPredicted RBP6.06□□□□□ -1.44
HDDC3-204ENST00000559834 STAG3L2P0CL84 134 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 STAG3L3P0CL85 134 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 GCHFRP30047 84 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 SERTAD4-AS1Q5TG53 156 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 DAZ4Q86SG3 579 aaKnown RBP6.06□□□□□ -1.44
HDDC3-204ENST00000559834 CYB561D1Q8N8Q1 229 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 OR2T35Q8NGX2 323 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 BAALCQ8WXS3 180 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 RAB24Q969Q5 203 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 PARLQ9H300 379 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 DAZ3Q9NR90 486 aaKnown RBP6.06□□□□□ -1.44
HDDC3-204ENST00000559834 TMEM167BQ9NRX6 74 aa6.06□□□□□ -1.44
HDDC3-204ENST00000559834 HERC1Q15751 4861 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 LECT2O14960 151 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 CXorf1O96002 111 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 IGLV2-11P01706 119 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 ASIPP42127 132 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 SERF2P84101 59 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 WFDC2Q14508 124 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 ELOBQ15370 118 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 KCNIP4Q6PIL6 250 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 TMEM75Q8N9X5 138 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 SYT8Q8NBV8 401 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 SUN5Q8TC36 379 aa6.05□□□□□ -1.44
HDDC3-204ENST00000559834 RNF222A6NCQ9 220 aa6.04□□□□□ -1.44
HDDC3-204ENST00000559834 RHODO00212 210 aa6.04□□□□□ -1.44
HDDC3-204ENST00000559834 Q8N3U1 123 aa6.04□□□□□ -1.44
HDDC3-204ENST00000559834 HSD17B11Q8NBQ5 300 aa6.04□□□□□ -1.44
HDDC3-204ENST00000559834 OR2G3Q8NGZ4 309 aa6.04□□□□□ -1.44
HDDC3-204ENST00000559834 LINC00479Q96M42 142 aa6.04□□□□□ -1.44
HDDC3-204ENST00000559834 PSMG3Q9BT73 122 aaPredicted RBP6.04□□□□□ -1.44
HDDC3-204ENST00000559834 ACTR3CQ9C0K3 210 aaPredicted RBP6.04□□□□□ -1.44
HDDC3-204ENST00000559834 IL36BQ9NZH7 164 aa6.04□□□□□ -1.44
HDDC3-204ENST00000559834 IGKV2D-24A0A075B6R9 120 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 A0A087WX48 190 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 IGKV3D-20A0A0C4DH25 116 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 A0A1W2PRE2 83 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 OXTP01178 125 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 IFNA7P01567 189 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 LINC00694P0DN24 101 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 SCXQ7RTU7 201 aa6.03□□□□□ -1.44
HDDC3-204ENST00000559834 NIT1Q86X76 327 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms