RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 C17orf82Q86X59 251 aaPredicted RBP6.36□□□□□ -1.39
USP3-211ENST00000559257 NFAM1Q8NET5 270 aaPredicted RBP6.36□□□□□ -1.39
USP3-211ENST00000559257 C11orf45Q8TAV5 145 aa6.36□□□□□ -1.39
USP3-211ENST00000559257 M0R3E3 92 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 NXPH4O95158 308 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 CIRBPQ14011 172 aaKnown RBP6.35□□□□□ -1.39
USP3-211ENST00000559257 LYPD1Q8N2G4 141 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 TRAV7A0A075B6U4 112 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 I3L3M4 83 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 J3QT63 122 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 TSPEAR-AS2P59090 65 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 KHDC1LQ5JSQ8 128 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 Q8N2B8 174 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 HES7Q9BYE0 225 aa6.35□□□□□ -1.39
USP3-211ENST00000559257 TRAV13-2A0A0B4J235 113 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 SPTY2D1-AS1A0A0U1RR47 76 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 SH2D1AO60880 128 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 GAS8-AS1O95177 125 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 APOC4P55056 127 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 BEAN1Q3B7T3 259 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 IGLV4-69A0A075B6H9 119 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 IGKV1D-37A0A075B6S9 117 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 IGHV1OR21-1A0A087WYE8 117 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 IGHV1-45A0A0A0MS14 117 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 C10orf142B7Z368 130 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 H0Y8X5 98 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 ZNF32P17041 273 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 LINC00205P59089 165 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 KTN1-AS1Q86SY8 53 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 SMIM2Q9BVW6 85 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 KNTC1P50748 2209 aa6.34□□□□□ -1.39
USP3-211ENST00000559257 ESPL1Q14674 2120 aa6.34□□□□□ -1.4
USP3-211ENST00000559257 A0A087WVE0 104 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 IGKV3D-11A0A0A0MRZ8 115 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 IGLV3-32A0A0A0MS00 114 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 IGKV3D-7A0A0C4DH55 119 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 H3BS24 57 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 LEPROTO15243 131 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 NDUFB3O43676 98 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 IGLV3-19P01714 112 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 DEFB110Q30KQ9 67 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 LY6G5BQ8NDX9 201 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 TRBV10-3A0A0K0K1G6 114 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 E7EUB6 86 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 PROP1O75360 226 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 S100A7L2Q5SY68 101 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 C6orf223Q8N319 242 aa6.33□□□□□ -1.4
USP3-211ENST00000559257 INTS1Q8N201 2190 aaKnown RBP6.33□□□□□ -1.4
USP3-211ENST00000559257 FER1L5A0AVI2 2057 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 DOCK7Q96N67 2140 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 DNAH12Q6ZR08 3092 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 ZNF407Q9C0G0 2248 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 IGHV1-69DA0A0B4J2H0 117 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 IGIPA6NJ69 53 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 DAD1P61803 113 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 PATE1Q8WXA2 126 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 IMMP1LQ96LU5 166 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 CEP350Q5VT06 3117 aa6.32□□□□□ -1.4
USP3-211ENST00000559257 A0A1W2PNR3 127 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 DNAL4O96015 105 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 HOXA4Q00056 320 aaPredicted RBP6.31□□□□□ -1.4
USP3-211ENST00000559257 MLANAQ16655 118 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 RUSC1-AS1Q66K80 236 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 COX7A2LO14548 114 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 SPRY3O43610 288 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 ZNF826PQ6ZT77 177 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 WDR86Q86TI4 376 aa6.31□□□□□ -1.4
USP3-211ENST00000559257 BAALC-AS2P0C853 105 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 ERHP84090 104 aaKnown RBP6.3□□□□□ -1.4
USP3-211ENST00000559257 ZNF575Q86XF7 245 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 C11orf44Q8N8P7 122 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 PSMG3-AS1Q96PY0 264 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 RTTNQ86VV8 2226 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 F8WEM9 126 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 PVRIGQ6DKI7 326 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 C2orf66Q6UXQ4 117 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 TMEM61Q8N0U2 210 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 C8orf49Q96NF6 230 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 MSRB1Q9NZV6 116 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 C22orf24Q9Y442 160 aa6.3□□□□□ -1.4
USP3-211ENST00000559257 TRBV27A0A0K0K1C4 114 aa6.29□□□□□ -1.4
USP3-211ENST00000559257 IGHV4-34P06331 123 aa6.29□□□□□ -1.4
USP3-211ENST00000559257 EGR2P11161 476 aaPredicted RBP6.29□□□□□ -1.4
USP3-211ENST00000559257 TMEM141Q96I45 108 aa6.29□□□□□ -1.4
USP3-211ENST00000559257 RPL28P46779 137 aaKnown RBP6.28□□□□□ -1.4
USP3-211ENST00000559257 BLCAPP62952 87 aa6.28□□□□□ -1.4
USP3-211ENST00000559257 ESRGQ1W209 222 aa6.28□□□□□ -1.4
USP3-211ENST00000559257 ADAMTSL4-AS1Q5T5F5 129 aa6.28□□□□□ -1.4
USP3-211ENST00000559257 MPLKIPQ8TAP9 179 aa6.28□□□□□ -1.4
USP3-211ENST00000559257 MED12Q93074 2177 aa6.28□□□□□ -1.4
USP3-211ENST00000559257 A0A0J9YXY3 114 aa6.27□□□□□ -1.4
USP3-211ENST00000559257 LYRM9A8MSI8 78 aa6.27□□□□□ -1.4
USP3-211ENST00000559257 M0R1W7 72 aa6.27□□□□□ -1.4
USP3-211ENST00000559257 NDUFS5O43920 106 aa6.27□□□□□ -1.4
USP3-211ENST00000559257 OBSCN-AS1Q96MR7 158 aa6.27□□□□□ -1.4
USP3-211ENST00000559257 LITAFQ99732 161 aa6.27□□□□□ -1.4
USP3-211ENST00000559257 LINC00846Q9NV44 126 aa6.27□□□□□ -1.4
USP3-211ENST00000559257 PDE4DIPQ5VU43 2346 aa6.27□□□□□ -1.41
USP3-211ENST00000559257 IGHV5-51A0A0C4DH38 117 aa6.27□□□□□ -1.41
USP3-211ENST00000559257 NTN3O00634 580 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms