RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 C1orf54Q8WWF1 131 aa0.62□□□□□ -2.31
VPS13C-207ENST00000558919 LINC00470Q9BZP3 86 aa0.62□□□□□ -2.31
VPS13C-207ENST00000558919 CCDC167Q9P0B6 97 aa0.62□□□□□ -2.31
VPS13C-207ENST00000558919 KDM5CP41229 1560 aa0.62□□□□□ -2.31
VPS13C-207ENST00000558919 SIP14410 1827 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 LAMA4Q16363 1823 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 ERCC6Q03468 1493 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 COL24A1Q17RW2 1714 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 SNRNP200O75643 2136 aaKnown RBP0.61□□□□□ -2.31
VPS13C-207ENST00000558919 IBTKQ9P2D0 1353 aaPredicted RBP0.61□□□□□ -2.31
VPS13C-207ENST00000558919 CXorf51AA0A1B0GTR3 108 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 LOC101927531A0A1B0GV80 90 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 FAM92AA1XBS5 289 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 GNG7O60262 68 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 TFF1P04155 84 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 SLC25A6P12236 298 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 CAV3P56539 151 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 EMX2Q04743 252 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 SPCS2Q15005 226 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 SPANXN1Q5VSR9 72 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 Q6ZS92 163 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 COPS9Q8WXC6 57 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 SDF2Q99470 211 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 CCL19Q99731 98 aa0.61□□□□□ -2.31
VPS13C-207ENST00000558919 N4BP2Q86UW6 1770 aaPredicted RBP0.6□□□□□ -2.31
VPS13C-207ENST00000558919 TRAV12-2A0A075B6T6 113 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 A0A1W2PPM0 123 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 A6NIN4 97 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 FXYD1O00168 92 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 PITX3O75364 302 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 IL5P05113 134 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 PIRTP0C851 137 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 PIPP12273 146 aaPredicted RBP0.6□□□□□ -2.31
VPS13C-207ENST00000558919 FXYD3Q14802 87 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 RPL7L1Q6DKI1 246 aaKnown RBP0.6□□□□□ -2.31
VPS13C-207ENST00000558919 OR2T2Q6IF00 324 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 DEFB132Q7Z7B7 95 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 NDUFA11Q86Y39 141 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 LINC00208Q96KT6 92 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 PDCD10Q9BUL8 212 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 TMEM242Q9NWH2 141 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 NDUFA12Q9UI09 145 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 MUC5ACP98088 5654 aa0.6□□□□□ -2.31
VPS13C-207ENST00000558919 TMEM2Q9UHN6 1383 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 NBDYA0A0U1RRE5 68 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 TEX49A0A1B0GTD5 131 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 TCRBV3S1A0A5B6 114 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 SNCGO76070 127 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 SLC48A1Q6P1K1 146 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 CYP2G1PQ6ZSU1 146 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 Q8N6K4 173 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 C5orf56Q8N8D9 126 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 PPP1R1CQ8WVI7 109 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 SPTSSAQ969W0 71 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 IFI27L1Q96BM0 104 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 DPH3Q96FX2 82 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 TMEM141Q96I45 108 aa0.59□□□□□ -2.31
VPS13C-207ENST00000558919 E9PCH4 1651 aa0.59□□□□□ -2.32
VPS13C-207ENST00000558919 BICRAQ9NZM4 1560 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 WDR97A6NE52 1622 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 NDUFB6O95139 128 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 IFNA17P01571 189 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 APODP05090 189 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 HIST1H1DP16402 221 aaKnown RBP0.58□□□□□ -2.32
VPS13C-207ENST00000558919 ZNF56Q15929 161 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 C9orf116Q5BN46 136 aaPredicted RBP0.58□□□□□ -2.32
VPS13C-207ENST00000558919 MEIG1Q5JSS6 88 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 TSKUQ8WUA8 353 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 SNRNP25Q9BV90 132 aaKnown RBP0.58□□□□□ -2.32
VPS13C-207ENST00000558919 SEC11CQ9BY50 192 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 RPRMQ9NS64 109 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 COA4Q9NYJ1 87 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 GRIN2AQ12879 1464 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 CDK12Q9NYV4 1490 aaPredicted RBP0.58□□□□□ -2.32
VPS13C-207ENST00000558919 UNC13CQ8NB66 2214 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 USP54Q70EL1 1684 aa0.58□□□□□ -2.32
VPS13C-207ENST00000558919 NAIPQ13075 1403 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 TRAV12-3A0A0B4J271 114 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 PIGBOS1A0A0B4J2F0 54 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 A0A1B0GV90 55 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 DLEU1O43261 78 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 FREM3P0C091 2139 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 FXYD6P3P58550 94 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 UBE2G1P62253 170 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 KLKP1Q107X0 134 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 SPINK13Q1W4C9 94 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 C10orf99Q6UWK7 81 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.57□□□□□ -2.32
VPS13C-207ENST00000558919 AGPAT4-IT1Q9H0P7 198 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 RERGLQ9H628 205 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 NAA60Q9H7X0 242 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 BET1LQ9NYM9 111 aa0.57□□□□□ -2.32
VPS13C-207ENST00000558919 ZFC3H1O60293 1989 aaKnown RBP0.57□□□□□ -2.32
VPS13C-207ENST00000558919 ROCK2O75116 1388 aaKnown RBP0.57□□□□□ -2.32
VPS13C-207ENST00000558919 SYNE2Q8WXH0 6885 aaKnown RBP0.57□□□□□ -2.32
VPS13C-207ENST00000558919 NUP210Q8TEM1 1887 aaPredicted RBP0.56□□□□□ -2.32
VPS13C-207ENST00000558919 MYOM3Q5VTT5 1437 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 FGF7P21781 194 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 CBLN1P23435 193 aa0.56□□□□□ -2.32
VPS13C-207ENST00000558919 SPINT3P49223 89 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms