RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 HSD52Q0P140 79 aa5.49□□□□□ -1.53
VPS13C-206ENST00000558338 DEFB112Q30KQ8 113 aa5.49□□□□□ -1.53
VPS13C-206ENST00000558338 C2orf91Q6ZV80 131 aa5.49□□□□□ -1.53
VPS13C-206ENST00000558338 SMIM2Q9BVW6 85 aa5.49□□□□□ -1.53
VPS13C-206ENST00000558338 A6NDN8 102 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 KLLNB2CW77 178 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 SMIM17P0DL12 118 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 RNASE4P34096 147 aaKnown RBP5.48□□□□□ -1.53
VPS13C-206ENST00000558338 UBE2V1Q13404 147 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 ANXA2RQ3ZCQ2 193 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 TMEM97Q5BJF2 176 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 C18orf15Q96N68 181 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 VPREB3Q9UKI3 123 aa5.48□□□□□ -1.53
VPS13C-206ENST00000558338 TACC2O95359 2948 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 A0A096LNT2 108 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 LGALS9O00182 355 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 IGHV4-59P01825 116 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 ELANEP08246 267 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 GATA1P15976 413 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-206ENST00000558338 PLNP26678 52 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 FXYD7P58549 80 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 SUMO2P61956 95 aaKnown RBP5.47□□□□□ -1.53
VPS13C-206ENST00000558338 SNRPD3P62318 126 aaKnown RBP5.47□□□□□ -1.53
VPS13C-206ENST00000558338 FAM159AQ6UWV7 190 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 Q6ZS46 218 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 C11orf44Q8N8P7 122 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 FOXC2Q99958 501 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 RELNP78509 3460 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 TRAV12-1A0A0B4J245 112 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 TAX1BP3O14907 124 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 GAS8-AS1O95177 125 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 LGALS1P09382 135 aaKnown RBP5.47□□□□□ -1.53
VPS13C-206ENST00000558338 NMUP48645 174 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 RPL32P62910 135 aaKnown RBP5.47□□□□□ -1.53
VPS13C-206ENST00000558338 VAMP3Q15836 100 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 LRRC75A-AS1Q8N1F1 130 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 POM121L12Q8N7R1 296 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 DCANP1Q8TF63 244 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 HIGD1BQ9P298 99 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 DKK2Q9UBU2 259 aa5.47□□□□□ -1.53
VPS13C-206ENST00000558338 SPTBN4Q9H254 2564 aa5.46□□□□□ -1.53
VPS13C-206ENST00000558338 A0A087WX48 190 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 TRAV26-2A0A0B4J265 109 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 C7orf71A4D174 169 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-206ENST00000558338 DUSP14O95147 198 aaKnown RBP5.46□□□□□ -1.54
VPS13C-206ENST00000558338 FSHBP01225 129 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 MGPP08493 103 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 SERTAD4-AS1Q5TG53 156 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 LCNL1Q6ZST4 164 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 TP73-AS1Q9UF72 201 aa5.46□□□□□ -1.54
VPS13C-206ENST00000558338 IGKV3-7A0A075B6H7 116 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 USP17L23D6RBM5 183 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 F6UB75 175 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 RNASE3P12724 160 aaKnown RBP5.45□□□□□ -1.54
VPS13C-206ENST00000558338 Q6YL49 198 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 ERASQ7Z444 233 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 TEX29Q8N6K0 151 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 C14orf178Q8N769 122 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-206ENST00000558338 SYT8Q8NBV8 401 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 OR4C5Q8NGB2 326 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 RASL10AQ92737 203 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 TOMM6Q96B49 74 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 UBE2E2Q96LR5 201 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 MED13LQ71F56 2210 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 F8VRH5 84 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 H3BRM9 83 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 H7C1H1 209 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 K7EQG2 157 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 Q6ZQT7 251 aa5.45□□□□□ -1.54
VPS13C-206ENST00000558338 CACNA1BQ00975 2339 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 A0A0J9YX75 114 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 CCL25O15444 150 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 IGHV4-31P0DP07 118 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 GYPEP15421 78 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 ZC2HC1BQ5TFG8 222 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 ADAMTSL5Q6ZMM2 481 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 NRGNQ92686 78 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 SCGB3A1Q96QR1 104 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 YAE1D1Q9NRH1 226 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 HHLA3Q9XRX5 114 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 ITPR1Q14643 2758 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 NCOR2Q9Y618 2525 aa5.44□□□□□ -1.54
VPS13C-206ENST00000558338 IGHV4OR15-8A0A075B7B6 117 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 A0A087WW49 117 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 CBY3A6NI87 242 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 GNRH2O43555 120 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 ZNF688P0C7X2 276 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 SRD5A1P18405 259 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 DEFB1P60022 68 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 FOXI2Q6ZQN5 318 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 ZNF479Q96JC4 524 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 ZNF702PQ9H963 129 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 MRPL35Q9NZE8 188 aaKnown RBP5.43□□□□□ -1.54
VPS13C-206ENST00000558338 TRGV11A0A075B6L2 103 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 TRAV2A0A0B4J234 112 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 C9orf118A6NHY6 69 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 CD7P09564 240 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 TAL2Q16559 108 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 DEFB113Q30KQ7 82 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms