RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RNF223E7ERA6 249 aa9.71□□□□□ -0.86
LDLR-207ENST00000558013 IGHG2P01859 326 aa9.71□□□□□ -0.86
LDLR-207ENST00000558013 RNASE3P12724 160 aaKnown RBP9.71□□□□□ -0.86
LDLR-207ENST00000558013 LINC00477Q96M19 166 aa9.71□□□□□ -0.86
LDLR-207ENST00000558013 CCL19Q99731 98 aa9.71□□□□□ -0.86
LDLR-207ENST00000558013 NHP2Q9NX24 153 aaKnown RBP9.71□□□□□ -0.86
LDLR-207ENST00000558013 NF1P21359 2839 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 ATP5LO75964 103 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 ATP5J2P56134 94 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 SUMO2P61956 95 aaKnown RBP9.7□□□□□ -0.86
LDLR-207ENST00000558013 C10orf105Q8TEF2 133 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 MEGF9Q9H1U4 602 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 ZNF462Q96JM2 2506 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 A0A087WX48 190 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 TRAV21A0A0B4J279 112 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 A0A1W2PPM0 123 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 IGKV3-20P01619 116 aa9.7□□□□□ -0.86
LDLR-207ENST00000558013 K7EP34 96 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 ASIPP42127 132 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 MAPK1IP1LQ8NDC0 245 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 PIMREGQ9BSJ6 248 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 SPCS1Q9Y6A9 102 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 A6NDX4 124 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.69□□□□□ -0.86
LDLR-207ENST00000558013 CRIP2P52943 208 aaPredicted RBP9.69□□□□□ -0.86
LDLR-207ENST00000558013 EMP1P54849 157 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 SCGB3A1Q96QR1 104 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 PRORYQ9H606 182 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 SETD2Q9BYW2 2564 aaPredicted RBP9.69□□□□□ -0.86
LDLR-207ENST00000558013 PRSS47A8MTI9 375 aa9.69□□□□□ -0.86
LDLR-207ENST00000558013 A0A087WWL8 130 aa9.68□□□□□ -0.86
LDLR-207ENST00000558013 SAMD5Q5TGI4 173 aa9.68□□□□□ -0.86
LDLR-207ENST00000558013 OVOL1O14753 267 aa9.68□□□□□ -0.86
LDLR-207ENST00000558013 SMIM13P0DJ93 91 aa9.68□□□□□ -0.86
LDLR-207ENST00000558013 MRAP2Q96G30 205 aa9.68□□□□□ -0.86
LDLR-207ENST00000558013 GTF2H5Q6ZYL4 71 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 DPH3P1Q9H4G8 78 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 EPG5Q9HCE0 2579 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 TRAV12-3A0A0B4J271 114 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 PHLDA1Q8WV24 401 aaPredicted RBP9.67□□□□□ -0.86
LDLR-207ENST00000558013 FAM19A4Q96LR4 140 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 LENEPQ9Y5L5 61 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 TRAV12-2A0A075B6T6 113 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 RIPPLY3P57055 190 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 C2orf66Q6UXQ4 117 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 CEND1Q8N111 149 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 CSTL1Q9H114 145 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 SMPXQ9UHP9 88 aa9.67□□□□□ -0.86
LDLR-207ENST00000558013 CLEC2AQ6UVW9 174 aa9.66□□□□□ -0.86
LDLR-207ENST00000558013 USMG5Q96IX5 58 aa9.66□□□□□ -0.86
LDLR-207ENST00000558013 DAZ1Q9NQZ3 744 aaKnown RBP9.66□□□□□ -0.86
LDLR-207ENST00000558013 ZNF469Q96JG9 3925 aaPredicted RBP9.66□□□□□ -0.86
LDLR-207ENST00000558013 DUSP14O95147 198 aaKnown RBP9.66□□□□□ -0.86
LDLR-207ENST00000558013 IGLV1-40P01703 118 aa9.66□□□□□ -0.86
LDLR-207ENST00000558013 IGHV4-59P01825 116 aa9.66□□□□□ -0.86
LDLR-207ENST00000558013 MSMBP08118 114 aa9.66□□□□□ -0.86
LDLR-207ENST00000558013 HIGD1BQ9P298 99 aa9.66□□□□□ -0.86
LDLR-207ENST00000558013 CHTOPQ9Y3Y2 248 aaKnown RBP9.66□□□□□ -0.86
LDLR-207ENST00000558013 NAV2Q8IVL1 2488 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 ZNF688P0C7X2 276 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 TOMM6Q96B49 74 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 DUX5Q96PT3 197 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 F8VRH5 84 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 H7C1H1 209 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 LINC00315P59091 139 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 NEXN-AS1Q8NBZ9 246 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 BAALCQ8WXS3 180 aa9.65□□□□□ -0.86
LDLR-207ENST00000558013 SONP18583 2426 aaKnown RBP9.65□□□□□ -0.86
LDLR-207ENST00000558013 PRSS29PA6NIE9 313 aa9.65□□□□□ -0.87
LDLR-207ENST00000558013 FABP2P12104 132 aa9.65□□□□□ -0.87
LDLR-207ENST00000558013 RPL39P62891 51 aaKnown RBP9.65□□□□□ -0.87
LDLR-207ENST00000558013 MTURNQ8N3F0 131 aa9.65□□□□□ -0.87
LDLR-207ENST00000558013 CHD6Q8TD26 2715 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 DCANP1Q8TF63 244 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 CD7P09564 240 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 FAM74A4Q5TZK3 123 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 KLHL30-AS1Q8NEE0 82 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 ATP6V0BQ99437 205 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 HIST1H4GQ99525 98 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 TM2D2Q9BX73 214 aa9.64□□□□□ -0.87
LDLR-207ENST00000558013 PLNP26678 52 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 ORMDL2Q53FV1 153 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 AMTNQ6UX39 209 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 CYSLTR1Q9Y271 337 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 KIF25-AS1Q9Y6Z4 181 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 F5H697 171 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 TSHBP01222 138 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 PSMG4Q5JS54 123 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 MDFICQ9P1T7 246 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 NOTCH3Q9UM47 2321 aa9.63□□□□□ -0.87
LDLR-207ENST00000558013 K7ERU9 68 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 HLA-DRB4P13762 266 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 CFHR3Q02985 330 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 COTL1Q14019 142 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 DEFB112Q30KQ8 113 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 HIST2H2BDQ6DRA6 164 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 C20orf78Q9BR46 151 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 HLA-DRB4X5D2U9 266 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 CRYGDP07320 174 aa9.62□□□□□ -0.87
LDLR-207ENST00000558013 CD300EQ496F6 205 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms