RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 WDR73Q6P4I2 378 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 Q6ZRN7 208 aaPredicted RBP5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 FAM231DQ6ZW35 169 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 TMEM75Q8N9X5 138 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 ZNF586Q9NXT0 402 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 IL36BQ9NZH7 164 aa5.65□□□□□ -1.5
CCDC88C-214ENST00000557507 TRAV12-2A0A075B6T6 113 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 A0A1W2PPQ1 181 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 CBY3A6NI87 242 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 GATCO43716 136 aaKnown RBP5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 MT-ND6P03923 174 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 TSPOP30536 169 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 LINC00315P59091 139 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 MRPL53Q96EL3 112 aaKnown RBP5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 C16orf92Q96LL3 132 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 C18orf15Q96N68 181 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 UPK3BQ9BT76 320 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 DERL1Q9BUN8 251 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 RPH3ALQ9UNE2 315 aa5.64□□□□□ -1.51
CCDC88C-214ENST00000557507 TRAV26-1A0A087WT03 109 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 FAM231BA6NCW3 169 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 A8MWL6 223 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 LTAP01374 205 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 P01737 135 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 TYMSP04818 313 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 S100A8P05109 93 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 PFN1P07737 140 aaKnown RBP5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 ESRGQ1W209 222 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 CT83Q5H943 113 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 IGFL4Q6B9Z1 124 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 RASL11AQ6T310 242 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 TMEM183AQ8IXX5 376 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 RNF182Q8N6D2 247 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 FRZBQ92765 325 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 BORCS7Q96B45 105 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 PYGO2Q9BRQ0 406 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 MDFICQ9P1T7 246 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 ZNF492Q9P255 531 aa5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 MRPS16Q9Y3D3 137 aaKnown RBP5.63□□□□□ -1.51
CCDC88C-214ENST00000557507 TGIF2-C20orf24A0A0A6YYL0 155 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 TRAV8-2A0A0B4J237 113 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 A0A0J9YY99 117 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 RBAKDNA6NC62 111 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 DIRC3C9JPN6 131 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 PRB4P10163 310 aaPredicted RBP5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 KRTAP10-1P60331 282 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 PSG3Q16557 428 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 Q6AWC8 147 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 GOLT1AQ6ZVE7 132 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 YPEL4Q96NS1 127 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 GFRA4Q9GZZ7 299 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 ZNF331Q9NQX6 463 aaPredicted RBP5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 NAT8BQ9UHF3 227 aa5.62□□□□□ -1.51
CCDC88C-214ENST00000557507 HMCN2Q8NDA2 5059 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 TRBV20OR9-2A0A075B6H5 130 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 A0A1B0GW15 77 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 LCE2BO14633 110 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 MRPS12O15235 138 aaKnown RBP5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 DUSP14O95147 198 aaKnown RBP5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 SMR3BP02814 79 aaPredicted RBP5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 DNAH10OSP0CZ25 163 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 HOXA5P20719 270 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 RPS20P60866 119 aaKnown RBP5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 GNG5P63218 68 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 HAMPP81172 84 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 OR5I1Q13606 314 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 TMEM78Q5T7P6 136 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 PRR27Q6MZM9 219 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 ATP5L2Q7Z4Y8 100 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 PRNTQ86SH4 94 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 Q86TA4 180 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 EXOC3-AS1Q8N2X6 119 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 LINC00612Q8N6U2 182 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 RNASE8Q8TDE3 154 aaKnown RBP5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 TSKUQ8WUA8 353 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 C16orf74Q96GX8 76 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 RPP21Q9H633 154 aaKnown RBP5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 NOP10Q9NPE3 64 aaKnown RBP5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 PSG8Q9UQ74 426 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 TRAPPC1Q9Y5R8 145 aa5.61□□□□□ -1.51
CCDC88C-214ENST00000557507 SMIM27A0A1W2PRY6 76 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 PGPEP1LA6NFU8 196 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 K7EN84 100 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 HLA-DQA1P01909 254 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 CXCL1P09341 107 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 HTN1P15515 57 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 S100A2P29034 98 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 CDPF1Q6NVV7 123 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 TMEM256Q8N2U0 113 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 ZNF738Q8NE65 137 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 TMEM263Q8WUH6 116 aaKnown RBP5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 LINC01587Q99440 93 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 GNB1LQ9BYB4 327 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 PGPEP1Q9NXJ5 209 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 TIMM8BQ9Y5J9 83 aaPredicted RBP5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 LENEPQ9Y5L5 61 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 V9GYV3 84 aa5.6□□□□□ -1.51
CCDC88C-214ENST00000557507 TRAV34A0A0B4J273 112 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 LOC105371267A0A1B0GV96 52 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms