RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ATP6V1G1O75348 118 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 MBP02144 154 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 SMR3BP02814 79 aaPredicted RBP7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 ATP6V0CP27449 155 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 SUMO1P63165 101 aaKnown RBP7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 FLI1Q01543 452 aaPredicted RBP7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 LGALSLQ3ZCW2 172 aaPredicted RBP7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 SMUG1Q53HV7 270 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 DPPA3Q6W0C5 159 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 PRNTQ86SH4 94 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 TMEM75Q8N9X5 138 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 SUN5Q8TC36 379 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 C9orf85Q96MD7 179 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 PSMG3Q9BT73 122 aaPredicted RBP7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 Q9HAA7 133 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 EPDR1Q9UM22 224 aa7.43□□□□□ -1.22
CCDC88C-213ENST00000557455 LRCOL1A6NCL2 159 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 PGPEP1LA6NFU8 196 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 ARPC5O15511 151 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 IFNA7P01567 189 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 IGLV2-11P01706 119 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 IGHV3-30P01768 117 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 IGHV3-33P01772 117 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 IGHV3-30-3P0DP02 117 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 IGHV3-30-5P0DP03 117 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 MGST1P10620 155 aaKnown RBP7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 SERF2P84101 59 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 Q5BKY6 102 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 ZNF506Q5JVG8 444 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 LELP1Q5T871 98 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 CYB561D1Q8N8Q1 229 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 NTN5Q8WTR8 489 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 PTH2Q96A98 100 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 GTSF1LQ9H1H1 148 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 TMEM167BQ9NRX6 74 aa7.42□□□□□ -1.22
CCDC88C-213ENST00000557455 DNAH8Q96JB1 4490 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 A0A0D9SG52 128 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 GGTLC3B5MD39 225 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 FAM229AH3BQW9 127 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 CXorf1O96002 111 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 RNASE3P12724 160 aaKnown RBP7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 ZNF345Q14585 488 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 SAPCD1Q5SSQ6 148 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 TMUB2Q71RG4 321 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 Q8N814 137 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 INO80EQ8NBZ0 244 aaPredicted RBP7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 ATP6V0E2Q8NHE4 81 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 AQP10Q96PS8 301 aa7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 ACTR3CQ9C0K3 210 aaPredicted RBP7.41□□□□□ -1.22
CCDC88C-213ENST00000557455 KANTRA0A1W2PQU2 76 aa7.4□□□□□ -1.22
CCDC88C-213ENST00000557455 S100A4P26447 101 aaKnown RBP7.4□□□□□ -1.22
CCDC88C-213ENST00000557455 HAMPP81172 84 aa7.4□□□□□ -1.22
CCDC88C-213ENST00000557455 LAGE3Q14657 143 aa7.4□□□□□ -1.22
CCDC88C-213ENST00000557455 TMEM70Q9BUB7 260 aa7.4□□□□□ -1.22
CCDC88C-213ENST00000557455 SH3BGRL3Q9H299 93 aa7.4□□□□□ -1.22
CCDC88C-213ENST00000557455 TNFSF18Q9UNG2 199 aa7.4□□□□□ -1.22
CCDC88C-213ENST00000557455 DMBT1Q9UGM3 2413 aaPredicted RBP7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 A0A1W2PRE2 83 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 A8MWV9 139 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 TEX261Q6UWH6 196 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 ZFP2Q6ZN57 461 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 KCNRGQ8N5I3 272 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 TM2D2Q9BX73 214 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 PARLQ9H300 379 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 SRRM2Q9UQ35 2752 aaKnown RBP7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 MYCBP2O75592 4640 aa7.39□□□□□ -1.23
CCDC88C-213ENST00000557455 TRAV34A0A0B4J273 112 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 IGKV3D-20A0A0C4DH25 116 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 FABP5P3A8MUU1 101 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 BCL2L11O43521 198 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 RAB14P61106 215 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 Q6ZSN1 163 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 SLC51BQ86UW2 128 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 LINC00479Q96M42 142 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 ARL2-SNX15V9GYD0 113 aa7.38□□□□□ -1.23
CCDC88C-213ENST00000557455 GAGE12JA6NER3 117 aa7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 ASIPP42127 132 aa7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 GAGE1Q13065 139 aa7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 GAGE4Q13068 117 aa7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 GAGE5Q13069 117 aa7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 GAGE13Q4V321 117 aa7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 PIK3CD-AS1Q5SR53 167 aa7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 RPL7L1Q6DKI1 246 aaKnown RBP7.37□□□□□ -1.23
CCDC88C-213ENST00000557455 TRAV8-3A0A0A6YYJ7 113 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 BORCS7-ASMTA0A0B4J1R7 106 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 CTXND1A0A1B0GTU2 59 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 RNF222A6NCQ9 220 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 B4DEV8 164 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 PEX7O00628 323 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 S100A1P23297 94 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 FGF8P55075 233 aaPredicted RBP7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 UBE2G2P60604 165 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 TOR2AQ5JU69 321 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 Q8N3U1 123 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 JPT2Q9H910 190 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 IL36BQ9NZH7 164 aa7.36□□□□□ -1.23
CCDC88C-213ENST00000557455 A0A087WWC5 75 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 H3BVH4 76 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 LINC00694P0DN24 101 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 ZNF726P1Q15940 193 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms