RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 SPATA8Q6RVD6 105 aa0.48□□□□□ -2.33
SCFD1-217ENST00000555953 IDO2Q6ZQW0 420 aa0.48□□□□□ -2.33
SCFD1-217ENST00000555953 C3orf62Q6ZUJ4 267 aa0.48□□□□□ -2.33
SCFD1-217ENST00000555953 PFDN5Q99471 154 aa0.48□□□□□ -2.33
SCFD1-217ENST00000555953 VPS25Q9BRG1 176 aa0.48□□□□□ -2.33
SCFD1-217ENST00000555953 NOP16Q9Y3C1 178 aaKnown RBP0.48□□□□□ -2.33
SCFD1-217ENST00000555953 TRBV20-1A0A075B6N2 111 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 PLGLB1Q02325 96 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 ASB16-AS1Q495Z4 193 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 CCDC58Q4VC31 144 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 LINC01545Q5VT33 79 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 Q6ZS92 163 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 Q6ZUT4 128 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 PLAC4Q8WY50 150 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 IFI27L1Q96BM0 104 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 SPANXA1Q9NS26 97 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 TRPM7Q96QT4 1865 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 MUC5ACP98088 5654 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 DISP2A7MBM2 1401 aa0.47□□□□□ -2.33
SCFD1-217ENST00000555953 NINQ8N4C6 2090 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 A0A0D9SG42 100 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 PNMA8CA0A1B0GUJ8 204 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 A0A1B0GV90 55 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 SPAARA0A1B0GVQ0 90 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 GYPBP06028 91 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 CCKP06307 115 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 SPINT3P49223 89 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 POLR2JP52435 117 aaKnown RBP0.46□□□□□ -2.34
SCFD1-217ENST00000555953 COPZ1P61923 177 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 NCS1P62166 190 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 C10orf99Q6UWK7 81 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 ATP11AUNQ6ZP68 121 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 DEFB132Q7Z7B7 95 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 ATP6V0E2Q8NHE4 81 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 DYNLRB2Q8TF09 96 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 C10orf82Q8WW14 230 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 TCEAL4Q96EI5 215 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 NDUFA12Q9UI09 145 aa0.46□□□□□ -2.34
SCFD1-217ENST00000555953 CDK12Q9NYV4 1490 aaPredicted RBP0.46□□□□□ -2.34
SCFD1-217ENST00000555953 ADGRB1O14514 1584 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 HELZP42694 1942 aaKnown RBP0.45□□□□□ -2.34
SCFD1-217ENST00000555953 J3QLW9 94 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 RBP4P02753 201 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 PIRTP0C851 137 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 HIST1H1DP16402 221 aaKnown RBP0.45□□□□□ -2.34
SCFD1-217ENST00000555953 ZNF137PP52743 207 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 CAV3P56539 151 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 S100A7L2Q5SY68 101 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 XAF1Q6GPH4 301 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 OR2T2Q6IF00 324 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 UNQ5815/PRO19632Q6UWF5 114 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 TSKUQ8WUA8 353 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 LSM10Q969L4 123 aaKnown RBP0.45□□□□□ -2.34
SCFD1-217ENST00000555953 DPH3Q96FX2 82 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 ATG5Q9H1Y0 275 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 SPANXCQ9NY87 97 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 MRPL35Q9NZE8 188 aaKnown RBP0.45□□□□□ -2.34
SCFD1-217ENST00000555953 AFDNP55196 1824 aaKnown RBP0.45□□□□□ -2.34
SCFD1-217ENST00000555953 DLEC1Q9Y238 1755 aa0.45□□□□□ -2.34
SCFD1-217ENST00000555953 NAV3Q8IVL0 2385 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 A0A087WTM6 91 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 CCDC179H3BU77 68 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 K7EP13 123 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 FXYD1O00168 92 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 MMGT1Q8N4V1 131 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 DMAC1Q96GE9 116 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 LINC00470Q9BZP3 86 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 TAS2R8Q9NYW2 309 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 PHLPP1O60346 1717 aa0.44□□□□□ -2.34
SCFD1-217ENST00000555953 RREB1Q92766 1687 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 MAP2P11137 1827 aaKnown RBP0.43□□□□□ -2.34
SCFD1-217ENST00000555953 MBD5Q9P267 1494 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 TRBV10-1A0A0K0K1A3 114 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 CLPSL1A2RUU4 121 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 HIGD1CA8MV81 97 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 J3QR89 54 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 ELOF1P60002 83 aaKnown RBP0.43□□□□□ -2.34
SCFD1-217ENST00000555953 UBE2G1P62253 170 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 C6orf52Q5T4I8 152 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 VSTM2AQ8TAG5 236 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 MAGOHBQ96A72 148 aaKnown RBP0.43□□□□□ -2.34
SCFD1-217ENST00000555953 SEC11CQ9BY50 192 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 PLXNA2O75051 1894 aa0.43□□□□□ -2.34
SCFD1-217ENST00000555953 LOC285556D6RIA3 1793 aa0.42□□□□□ -2.34
SCFD1-217ENST00000555953 MUC22E2RYF6 1773 aaPredicted RBP0.42□□□□□ -2.34
SCFD1-217ENST00000555953 TRAV12-3A0A0B4J271 114 aa0.42□□□□□ -2.34
SCFD1-217ENST00000555953 LINC00587B1AMM8 73 aa0.42□□□□□ -2.34
SCFD1-217ENST00000555953 NCR2O95944 276 aa0.42□□□□□ -2.34
SCFD1-217ENST00000555953 PYYP10082 97 aa0.42□□□□□ -2.34
SCFD1-217ENST00000555953 TSC22D3Q99576 134 aa0.42□□□□□ -2.34
SCFD1-217ENST00000555953 TMEM242Q9NWH2 141 aa0.42□□□□□ -2.34
SCFD1-217ENST00000555953 ROCK2O75116 1388 aaKnown RBP0.42□□□□□ -2.34
SCFD1-217ENST00000555953 UHRF1BP1LA0JNW5 1464 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 CDK5RAP2Q96SN8 1893 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 MDN1Q9NU22 5596 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 SPAG17Q6Q759 2223 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 BLMP54132 1417 aaPredicted RBP0.41□□□□□ -2.34
SCFD1-217ENST00000555953 ASH1LQ9NR48 2969 aaKnown RBP0.41□□□□□ -2.34
SCFD1-217ENST00000555953 IL5P05113 134 aa0.41□□□□□ -2.34
SCFD1-217ENST00000555953 SPCS2Q15005 226 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms