RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LTAP01374 205 aa10.96□□□□□ -0.65
CCDC88C-209ENST00000554872 ZNF506Q5JVG8 444 aa10.96□□□□□ -0.65
CCDC88C-209ENST00000554872 ZC2HC1AQ96GY0 325 aa10.96□□□□□ -0.65
CCDC88C-209ENST00000554872 BOLA1Q9Y3E2 137 aa10.96□□□□□ -0.65
CCDC88C-209ENST00000554872 KIAA1109Q2LD37 5005 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 DYNC1H1Q14204 4646 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 S100A9P06702 114 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 MGST1P10620 155 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 TPT1P13693 172 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 CRIP1P50238 77 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 UBE2G1P62253 170 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 ZNF674Q2M3X9 581 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 FAM162BQ5T6X4 162 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 ZFP2Q6ZN57 461 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 Q6ZRN7 208 aaPredicted RBP10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 TCTE3Q8IZS6 198 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 FAM213BQ8TBF2 198 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 SFT2D1Q8WV19 159 aa10.95□□□□□ -0.66
CCDC88C-209ENST00000554872 PGPEP1LA6NFU8 196 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 A8MWV9 139 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 KRBOX1C9JBD0 128 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 DNAH10OSP0CZ25 163 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 ASIPP42127 132 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 LINC00315P59091 139 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 RHOHQ15669 191 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 CST9LP1Q5W188 147 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 TMUB2Q71RG4 321 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 SLC25A29Q8N8R3 303 aa10.94□□□□□ -0.66
CCDC88C-209ENST00000554872 TRAV1-1A0A0B4J248 108 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 B4DEV8 164 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 PAGE4O60829 102 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 SH2D1AO60880 128 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 PFDN1O60925 122 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 RAB5CP51148 216 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 LINC01559Q495D7 138 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 PRADC1Q9BSG0 188 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 LY96Q9Y6Y9 160 aa10.93□□□□□ -0.66
CCDC88C-209ENST00000554872 TRAV9-2A0A087WT02 112 aa10.92□□□□□ -0.66
CCDC88C-209ENST00000554872 H2AFB1P0C5Y9 115 aa10.92□□□□□ -0.66
CCDC88C-209ENST00000554872 S100A4P26447 101 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-209ENST00000554872 AKR1C3P42330 323 aa10.92□□□□□ -0.66
CCDC88C-209ENST00000554872 EIF5AL1Q6IS14 154 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-209ENST00000554872 PARLQ9H300 379 aa10.92□□□□□ -0.66
CCDC88C-209ENST00000554872 SCRT2Q9NQ03 307 aa10.92□□□□□ -0.66
CCDC88C-209ENST00000554872 LOC100131303A0A0U1RQF7 123 aa10.91□□□□□ -0.66
CCDC88C-209ENST00000554872 UFSP1Q6NVU6 142 aa10.91□□□□□ -0.66
CCDC88C-209ENST00000554872 NFE4Q86UQ8 179 aa10.91□□□□□ -0.66
CCDC88C-209ENST00000554872 ZNF575Q86XF7 245 aa10.91□□□□□ -0.66
CCDC88C-209ENST00000554872 MLST8Q9BVC4 326 aa10.91□□□□□ -0.66
CCDC88C-209ENST00000554872 CXCL1P09341 107 aa10.9□□□□□ -0.66
CCDC88C-209ENST00000554872 LINC00694P0DN24 101 aa10.9□□□□□ -0.66
CCDC88C-209ENST00000554872 WFDC10BQ8IUB3 73 aa10.9□□□□□ -0.66
CCDC88C-209ENST00000554872 C10orf126Q8N4M7 172 aa10.9□□□□□ -0.66
CCDC88C-209ENST00000554872 MANBALQ9NQG1 85 aa10.9□□□□□ -0.66
CCDC88C-209ENST00000554872 H3BVH4 76 aa10.89□□□□□ -0.67
CCDC88C-209ENST00000554872 RHODO00212 210 aa10.89□□□□□ -0.67
CCDC88C-209ENST00000554872 EVI2AP22794 236 aa10.89□□□□□ -0.67
CCDC88C-209ENST00000554872 NHLRC2Q8NBF2 726 aa10.89□□□□□ -0.67
CCDC88C-209ENST00000554872 SYT8Q8NBV8 401 aa10.89□□□□□ -0.67
CCDC88C-209ENST00000554872 C11orf52Q96A22 123 aa10.89□□□□□ -0.67
CCDC88C-209ENST00000554872 SCO2A0A1W2PP80 73 aa10.88□□□□□ -0.67
CCDC88C-209ENST00000554872 C16orf90A8MZG2 172 aa10.88□□□□□ -0.67
CCDC88C-209ENST00000554872 C1QBP02746 253 aa10.88□□□□□ -0.67
CCDC88C-209ENST00000554872 ARMS2P0C7Q2 107 aa10.88□□□□□ -0.67
CCDC88C-209ENST00000554872 LINC01556Q5JQF7 62 aa10.88□□□□□ -0.67
CCDC88C-209ENST00000554872 Q6ZNX1 250 aa10.88□□□□□ -0.67
CCDC88C-209ENST00000554872 M0R036 132 aa10.87□□□□□ -0.67
CCDC88C-209ENST00000554872 CDK2AP2O75956 126 aa10.87□□□□□ -0.67
CCDC88C-209ENST00000554872 SULT1A2P50226 295 aa10.87□□□□□ -0.67
CCDC88C-209ENST00000554872 LELP1Q5T871 98 aa10.87□□□□□ -0.67
CCDC88C-209ENST00000554872 DMRTA1Q5VZB9 504 aa10.87□□□□□ -0.67
CCDC88C-209ENST00000554872 MSRB1Q9NZV6 116 aa10.87□□□□□ -0.67
CCDC88C-209ENST00000554872 IGHV3-38A0A0C4DH36 116 aa10.86□□□□□ -0.67
CCDC88C-209ENST00000554872 TEX46H3BTG2 121 aa10.86□□□□□ -0.67
CCDC88C-209ENST00000554872 ZFP82Q8N141 532 aa10.86□□□□□ -0.67
CCDC88C-209ENST00000554872 SFRP2Q96HF1 295 aa10.86□□□□□ -0.67
CCDC88C-209ENST00000554872 GTSF1LQ9H1H1 148 aa10.86□□□□□ -0.67
CCDC88C-209ENST00000554872 PHLDA3Q9Y5J5 127 aa10.86□□□□□ -0.67
CCDC88C-209ENST00000554872 IGHV3-73A0A0B4J1V6 119 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 TRAV8-6A0A0B4J262 113 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 A0A1B0GV50 99 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 CRYGDP07320 174 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 Q6ZSN1 163 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 SPATA12Q7Z6I5 190 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 SLC51BQ86UW2 128 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 BAGE2Q86Y30 109 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 ATP6V0E2Q8NHE4 81 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 SMIM12Q96EX1 92 aa10.85□□□□□ -0.67
CCDC88C-209ENST00000554872 ERVFC1-1P60608 527 aa10.84□□□□□ -0.67
CCDC88C-209ENST00000554872 SAMD10Q9BYL1 202 aa10.84□□□□□ -0.67
CCDC88C-209ENST00000554872 LRP1BQ9NZR2 4599 aa10.84□□□□□ -0.67
CCDC88C-209ENST00000554872 GRIFINA4D1Z8 144 aa10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 SNAI2O43623 268 aa10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 OR5AL1P0C617 328 aa10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 RPL35P42766 123 aaKnown RBP10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 KRTAP10-2P60368 255 aa10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 CCL20P78556 96 aa10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 CDPF1Q6NVV7 123 aa10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 SSBP4Q9BWG4 385 aaPredicted RBP10.83□□□□□ -0.68
CCDC88C-209ENST00000554872 JPT2Q9H910 190 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms