RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 FOXA3P55318 350 aaPredicted RBP6.41□□□□□ -1.38
TDP1-208ENST00000553989 NUP35Q8NFH5 326 aa6.41□□□□□ -1.38
TDP1-208ENST00000553989 MLST8Q9BVC4 326 aa6.41□□□□□ -1.38
TDP1-208ENST00000553989 RPP21Q9H633 154 aaKnown RBP6.41□□□□□ -1.38
TDP1-208ENST00000553989 SERTM2A0A1B0GWG4 89 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 LTAP01374 205 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 P01737 135 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 TCRAP04437 139 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 RBMY1A1P0DJD3 496 aaKnown RBP6.4□□□□□ -1.38
TDP1-208ENST00000553989 RBMY1CP0DJD4 496 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 PYYP10082 97 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 SRIP30626 198 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 KRTDAPP60985 99 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 RBMY1FQ15415 496 aaKnown RBP6.4□□□□□ -1.38
TDP1-208ENST00000553989 MRPL54Q6P161 138 aaKnown RBP6.4□□□□□ -1.38
TDP1-208ENST00000553989 LINC00336Q6ZUF6 198 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 TRPT1Q86TN4 253 aaKnown RBP6.4□□□□□ -1.38
TDP1-208ENST00000553989 NHLRC2Q8NBF2 726 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 CHCHD1Q96BP2 118 aaKnown RBP6.4□□□□□ -1.38
TDP1-208ENST00000553989 ALKBH7Q9BT30 221 aaPredicted RBP6.4□□□□□ -1.38
TDP1-208ENST00000553989 NDFIP1Q9BT67 221 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 UQCR10Q9UDW1 63 aa6.4□□□□□ -1.38
TDP1-208ENST00000553989 DEFB131BA0A096LNP1 70 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 C19orf71A6NCJ1 209 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 K7EQG2 157 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 SPINK4O60575 86 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 HSBP1O75506 76 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 TCL1AP56279 114 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 LINC00310P59036 64 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 HBBP68871 147 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 PSMG4Q5JS54 123 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 MORN5Q5VZ52 161 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 BPIFA4PQ86YQ2 179 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 SVIPQ8NHG7 77 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 LINC00479Q96M42 142 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 NEU1Q99519 415 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 SNHG12Q9BXW3 62 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 Q9H3A6 140 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 HERC2O95714 4834 aa6.39□□□□□ -1.39
TDP1-208ENST00000553989 A0A1B0GXF2 115 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 HIGD1CA8MV81 97 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 M0R2N4 97 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 GIG44P09565 113 aaPredicted RBP6.38□□□□□ -1.39
TDP1-208ENST00000553989 IGLC1P0CG04 106 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 P0DMU3 169 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 FAM231AP0DMU4 169 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 FAM231CP0DMU5 169 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 PSG1P11464 419 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 RIGQ13278 110 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 KIAA1644Q3SXP7 199 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 Q6AWC8 147 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 NIT1Q86X76 327 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 UBE2DNLQ8IWF7 75 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 C18orf32Q8TCD1 76 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 BLNKQ8WV28 456 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 SHANK2-AS3Q9BTD1 123 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 C1QTNF4Q9BXJ3 329 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 SLC25A39Q9BZJ4 359 aaPredicted RBP6.38□□□□□ -1.39
TDP1-208ENST00000553989 CELA1Q9UNI1 258 aa6.38□□□□□ -1.39
TDP1-208ENST00000553989 TRAV9-2A0A087WT02 112 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 TRAV34A0A0B4J273 112 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 PRSS29PA6NIE9 313 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 NPIPB6E9PJ23 425 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 BTF3P20290 206 aaKnown RBP6.37□□□□□ -1.39
TDP1-208ENST00000553989 CSN1S1P47710 185 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 SNRPD3P62318 126 aaKnown RBP6.37□□□□□ -1.39
TDP1-208ENST00000553989 PSG9Q00887 426 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 GAGE1Q13065 139 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 PDE6HQ13956 83 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 KIR3DS1Q14943 382 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 COL5A1-AS1Q5SY13 56 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 DCANP1Q8TF63 244 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 MRPL36Q9P0J6 103 aaKnown RBP6.37□□□□□ -1.39
TDP1-208ENST00000553989 XCL2Q9UBD3 114 aa6.37□□□□□ -1.39
TDP1-208ENST00000553989 MRPS16Q9Y3D3 137 aaKnown RBP6.37□□□□□ -1.39
TDP1-208ENST00000553989 TRBV19A0A075B6N1 114 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 M0R2Z0 102 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 IL4P05112 153 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 SNRPCP09234 159 aaKnown RBP6.36□□□□□ -1.39
TDP1-208ENST00000553989 C3orf79P0CE67 100 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 EMP1P54849 157 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 RPS20P60866 119 aaKnown RBP6.36□□□□□ -1.39
TDP1-208ENST00000553989 SLAQ13239 276 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 C12orf74Q32Q52 190 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 SPATA45Q537H7 98 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 SAPCD1Q5SSQ6 148 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 PRR27Q6MZM9 219 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 C16orf54Q6UWD8 224 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 POM121L12Q8N7R1 296 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 Q8N976 141 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 TMEM75Q8N9X5 138 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 GATD1Q8NB37 220 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 PAM16Q9Y3D7 125 aa6.36□□□□□ -1.39
TDP1-208ENST00000553989 AGRNO00468 2067 aa6.35□□□□□ -1.39
TDP1-208ENST00000553989 IGHV3OR16-12A0A075B7B8 117 aa6.35□□□□□ -1.39
TDP1-208ENST00000553989 F2Z2F3 143 aa6.35□□□□□ -1.39
TDP1-208ENST00000553989 IGKV1-17P01599 117 aa6.35□□□□□ -1.39
TDP1-208ENST00000553989 LINC00614P0C842 121 aa6.35□□□□□ -1.39
TDP1-208ENST00000553989 IGLC2P0DOY2 106 aa6.35□□□□□ -1.39
TDP1-208ENST00000553989 IGLC3P0DOY3 106 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms