RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 C1QTNF4Q9BXJ3 329 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 AGPAT4-IT1Q9H0P7 198 aa3.71□□□□□ -1.81
LIMA1-214ENST00000552783 MRPL16Q9NX20 251 aaKnown RBP3.71□□□□□ -1.81
LIMA1-214ENST00000552783 ABCA2Q9BZC7 2435 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 FABP5P3A8MUU1 101 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 G3V318 75 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 HOXA3O43365 443 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-214ENST00000552783 ATP5LO75964 103 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 CDSNQ15517 529 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 BRD3OSQ6XYD6 125 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 Q6ZS46 218 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 RASL10AQ92737 203 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 KAAG1Q9UBP8 84 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 J3QR89 54 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 ARL3P36405 182 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 CRIP2P52943 208 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-214ENST00000552783 MYOZ3Q8TDC0 251 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 MUC4Q99102 2169 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 PRADC1Q9BSG0 188 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 SS18L2Q9UHA2 77 aa3.71□□□□□ -1.82
LIMA1-214ENST00000552783 RNF223E7ERA6 249 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 TCL1BO95988 128 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 SLC25A16P16260 332 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 LINC01559Q495D7 138 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 TMEM78Q5T7P6 136 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 SPANXN1Q5VSR9 72 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 PKD1L2Q7Z442 2459 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 A6NJY4 79 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 F8VRH5 84 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 H3BVH4 76 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 EIF4EBP3O60516 100 aaPredicted RBP3.7□□□□□ -1.82
LIMA1-214ENST00000552783 TSPEAR-AS2P59090 65 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 KLRB1Q12918 225 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 NEXN-AS1Q8NBZ9 246 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 BPESC1Q9GZL8 116 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 OR11H12B2RN74 326 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 CD7P09564 240 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 PF4V1P10720 104 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 SRD5A1P18405 259 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 OR11H1Q8NG94 326 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 OR11H2Q8NH07 326 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 AJUBAQ96IF1 538 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 C16orf92Q96LL3 132 aa3.7□□□□□ -1.82
LIMA1-214ENST00000552783 TRAV8-2A0A0B4J237 113 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 CLPSL1A2RUU4 121 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 ZNF815PA8K554 130 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 M0R381 172 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 IGKV3-20P01619 116 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 CRYGDP07320 174 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 ELANEP08246 267 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 NHLRC4P0CG21 123 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-214ENST00000552783 COX6B1P14854 86 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 HTN1P15515 57 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 PRTN3P24158 256 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 SAA4P35542 130 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 UBE2D1P51668 147 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 TAL2Q16559 108 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 BAALCQ8WXS3 180 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 H7C1H1 209 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 ATP6V0E1O15342 81 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 CRLF1O75462 422 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 TSHBP01222 138 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 MGPP08493 103 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 PLNP26678 52 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 UBE2D3P61077 147 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 UBE2D2P62837 147 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 TMEM95Q3KNT9 176 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 IGF2-ASQ6U949 168 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 DLX4Q92988 240 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-214ENST00000552783 SCGB3A1Q96QR1 104 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 METTL26Q96S19 204 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 BUB3O43684 328 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 DUSP14O95147 198 aaKnown RBP3.69□□□□□ -1.82
LIMA1-214ENST00000552783 SCGB1D4Q6XE38 83 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 TRPT1Q86TN4 253 aaKnown RBP3.69□□□□□ -1.82
LIMA1-214ENST00000552783 C14orf178Q8N769 122 aaPredicted RBP3.69□□□□□ -1.82
LIMA1-214ENST00000552783 SMIM2Q9BVW6 85 aa3.69□□□□□ -1.82
LIMA1-214ENST00000552783 C11orf86A6NJI1 115 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 F5H697 171 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 CFC1BP0CG36 223 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 CFC1P0CG37 223 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 SRSF9Q13242 221 aaKnown RBP eCLIP3.68□□□□□ -1.82
LIMA1-214ENST00000552783 KHDC1LQ5JSQ8 128 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 NDUFA11Q86Y39 141 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 ANKRD29Q8N6D5 301 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 MTORP42345 2549 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 EPG5Q9HCE0 2579 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 B5MCH6 92 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 ZFP36P26651 326 aaKnown RBP3.68□□□□□ -1.82
LIMA1-214ENST00000552783 RPL39P62891 51 aaKnown RBP3.68□□□□□ -1.82
LIMA1-214ENST00000552783 C2orf66Q6UXQ4 117 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 TOMM6Q96B49 74 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 RAX2Q96IS3 184 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 C20orf173Q96LM9 149 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 ZFAND3Q9H8U3 227 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 JPT2Q9H910 190 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 ERG28Q9UKR5 140 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 AKAP9Q99996 3911 aa3.68□□□□□ -1.82
LIMA1-214ENST00000552783 IGLV4-69A0A075B6H9 119 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms