RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 TMEM78Q5T7P6 136 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 C10orf113Q5VZT2 155 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SCGB1D4Q6XE38 83 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF818PQ6ZRF7 136 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 LHFPL1Q86WI0 220 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 BAP18Q8IXM2 172 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 TTC9CQ8N5M4 171 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 OR2D3Q8NGH3 330 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 OR4X1Q8NH49 305 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SGMS2Q8NHU3 365 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SFT2D1Q8WV19 159 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 MAFIPQ8WZ33 124 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 ACY3Q96HD9 319 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 C20orf166-AS1Q96NR2 134 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 AQP10Q96PS8 301 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 NABP2Q9BQ15 211 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SLC50A1Q9BRV3 221 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 PSMG3Q9BT73 122 aaPredicted RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 MRPL32Q9BYC8 188 aaKnown RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 PARD6GQ9BYG4 376 aaPredicted RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 WDR61Q9GZS3 305 aaKnown RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 GTSF1LQ9H1H1 148 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 MIXL1Q9H2W2 232 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 NDUFA4L2Q9NRX3 87 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 RPRMQ9NS64 109 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM14BQ9NUH8 114 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 MRPL27Q9P0M9 148 aaKnown RBP1.04□□□□□ -2.24
LIMA1-209ENST00000552008 LINC00527Q9UJ94 153 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 ANAPC10Q9UM13 185 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 HIGD1AQ9Y241 93 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 PXMP4Q9Y6I8 212 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 PLXND1Q9Y4D7 1925 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 SPAG17Q6Q759 2223 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF407Q9C0G0 2248 aa1.04□□□□□ -2.24
LIMA1-209ENST00000552008 BRCA2P51587 3418 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 KMT2EQ8IZD2 1858 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 DENND4CQ5VZ89 1909 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 BPTFQ12830 3046 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 SCN3AQ9NY46 2000 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 MKI67P46013 3256 aaKnown RBP1.03□□□□□ -2.24
LIMA1-209ENST00000552008 UBE2L5PA0A1B0GUS4 154 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 LINC01549A6NIU2 74 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 ODF3BA8MYP8 253 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 LY6LH3BQJ8 138 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 C19orf84I3L1E1 186 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 NDUFA4O00483 81 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 OVOL1O14753 267 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 PLA2G10O15496 165 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 CST7O76096 145 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 LY6HO94772 140 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 NDUFA3O95167 84 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 PPP1R17O96001 155 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 IGHV3-7P01780 117 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 METTL15P1P0C7V9 234 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 SAA1P0DJI8 122 aaPredicted RBP1.03□□□□□ -2.24
LIMA1-209ENST00000552008 C8orf88P0DMB2 117 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 IAPPP10997 89 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 CXCL2P19875 107 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 S100A4P26447 101 aaKnown RBP1.03□□□□□ -2.24
LIMA1-209ENST00000552008 CDC34P49427 236 aaPredicted RBP1.03□□□□□ -2.24
LIMA1-209ENST00000552008 TCTAP57738 103 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 RPL30P62888 115 aaKnown RBP1.03□□□□□ -2.24
LIMA1-209ENST00000552008 RHOGP84095 191 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 PDE6HQ13956 83 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 IQCJQ1A5X6 159 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 RRN3P1Q2M238 152 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 DEFB112Q30KQ8 113 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 LYRM7Q5U5X0 104 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 FAM78BQ5VT40 261 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 Q6AWC8 147 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 TEX261Q6UWH6 196 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 LCN15Q6UWW0 184 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 TOMM20LQ6UXN7 152 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 SDIM1Q6ZPB5 146 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 CYP2G1PQ6ZSU1 146 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 NDUFA11Q86Y39 141 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 GPHB5Q86YW7 130 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 KCNRGQ8N5I3 272 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 SIGLECL1Q8N7X8 197 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 C5orf56Q8N8D9 126 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 FAM213BQ8TBF2 198 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 C4orf3Q8WVX3 66 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 LEAP2Q969E1 77 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 GPR146Q96CH1 333 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 TP53RKQ96S44 253 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 TRGV9Q99603 122 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 SEC11CQ9BY50 192 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 SLC35B3Q9H1N7 401 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 C16orf95Q9H693 158 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 SMCO4Q9NRQ5 59 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 ZFP30Q9Y2G7 519 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 ARL2-SNX15V9GYD0 113 aa1.03□□□□□ -2.24
LIMA1-209ENST00000552008 ZFC3H1O60293 1989 aaKnown RBP1.03□□□□□ -2.25
LIMA1-209ENST00000552008 MYO18AQ92614 2054 aaKnown RBP1.03□□□□□ -2.25
LIMA1-209ENST00000552008 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.02□□□□□ -2.25
LIMA1-209ENST00000552008 TRAV2A0A0B4J234 112 aa1.02□□□□□ -2.25
LIMA1-209ENST00000552008 TRAV1-1A0A0B4J248 108 aa1.02□□□□□ -2.25
LIMA1-209ENST00000552008 TRGV4A0A0C4DH28 118 aa1.02□□□□□ -2.25
LIMA1-209ENST00000552008 CTXND1A0A1B0GTU2 59 aa1.02□□□□□ -2.25
LIMA1-209ENST00000552008 A0A1B0GV72 72 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms