RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 SMCR5Q8TEV8 140 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 C7orf33Q8WU49 177 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 CAMK2N2Q96S95 79 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 SMIM7Q9BQ49 75 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 LINC00574Q9H8X3 128 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 ABRACLQ9P1F3 81 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 DPM3Q9P2X0 92 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 DIDO1Q9BTC0 2240 aaKnown RBP1.4□□□□□ -2.19
LIMA1-207ENST00000551486 FANCMQ8IYD8 2048 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 PCNX3Q9H6A9 2034 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 SIPA1L1O43166 1804 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 SPHKAPQ2M3C7 1700 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 RIMBP3CA6NJZ7 1639 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 RIMBP3BA6NNM3 1639 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 RIMBP3Q9UFD9 1639 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 NEXMIFQ5QGS0 1516 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 PCNTO95613 3336 aa1.4□□□□□ -2.19
LIMA1-207ENST00000551486 RALGAPA2Q2PPJ7 1873 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 KIF26AQ9ULI4 1882 aaPredicted RBP1.39□□□□□ -2.19
LIMA1-207ENST00000551486 A0A1B0GUL6 1792 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 LTN1O94822 1766 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 CDC42BPGQ6DT37 1551 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 HCFC1P51610 2035 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 MYH6P13533 1939 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 IGLV4-3A0A075B6K6 122 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 TRAV7A0A075B6U4 112 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 A0A087WW49 117 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 A0A087X002 238 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 TRAV22A0A0B4J277 110 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV5-10-1A0A0J9YXX1 117 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 LINC01549A6NIU2 74 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 CEBPZOSA8MTT3 80 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 A8MWP4 228 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 E7EUB6 86 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 CHKB-CPT1BH3BT56 60 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 K7EMI3 77 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 LY6HO94772 140 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 LEPROTL1O95214 131 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV3-23P01764 117 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 MGST1P10620 155 aaKnown RBP1.39□□□□□ -2.19
LIMA1-207ENST00000551486 MIFP14174 115 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 RPL28P46779 137 aaKnown RBP1.39□□□□□ -2.19
LIMA1-207ENST00000551486 ROMO1P60602 79 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 KLKP1Q107X0 134 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 MOBPQ13875 183 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 CASC10Q5T4H9 136 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 Q5VV11 94 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 FAM53AQ6NSI3 398 aaPredicted RBP1.39□□□□□ -2.19
LIMA1-207ENST00000551486 SLC48A1Q6P1K1 146 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 C2orf82Q6UX34 121 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 Q6ZQT0 140 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 NDUFA11Q86Y39 141 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 Q8NDZ9 215 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 KLF14Q8TD94 323 aaPredicted RBP1.39□□□□□ -2.19
LIMA1-207ENST00000551486 IFI27L1Q96BM0 104 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 Q96M85 177 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 TIMM21Q9BVV7 248 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 DYNLRB1Q9NP97 96 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 U3KQK5 164 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 KNDC1Q76NI1 1749 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.39□□□□□ -2.19
LIMA1-207ENST00000551486 RNF17Q9BXT8 1623 aaKnown RBP1.39□□□□□ -2.19
LIMA1-207ENST00000551486 DSCAML1Q8TD84 2053 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 TANC2Q9HCD6 1990 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 SCN8AQ9UQD0 1980 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 MEGF6O75095 1541 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 ZMYM4Q5VZL5 1548 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 STRCQ7RTU9 1775 aa1.39□□□□□ -2.19
LIMA1-207ENST00000551486 ABCA8O94911 1581 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 ZNF646O15015 1829 aaPredicted RBP1.38□□□□□ -2.19
LIMA1-207ENST00000551486 ANKRD12Q6UB98 2062 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 ZFC3H1O60293 1989 aaKnown RBP1.38□□□□□ -2.19
LIMA1-207ENST00000551486 MCM3APO60318 1980 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 EML6Q6ZMW3 1958 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 GON4LQ3T8J9 2241 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 ZNF407Q9C0G0 2248 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 TRPM1Q7Z4N2 1603 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 ABCA6Q8N139 1617 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 NLRC5Q86WI3 1866 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IGLV8-61A0A075B6I0 122 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 TRBV25-1A0A075B6N4 114 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IGLV3-32A0A0A0MS00 114 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV3-73A0A0B4J1V6 119 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 PIGBOS1A0A0B4J2F0 54 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV7-4-1A0A0J9YVY3 117 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 hDV103S1A0JD37 113 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 SDHAF1A6NFY7 115 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 ZNF815PA8K554 130 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 SRRM5B3KS81 715 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 K7ERS5 55 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 LECT2O14960 151 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 LHBP01229 141 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IGKV1D-33P01593 117 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IGKV1-33P01594 117 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 CRPP02741 224 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 HMGN2P05204 90 aaKnown RBP1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV4-34P06331 123 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 FCER1GP30273 86 aa1.38□□□□□ -2.19
LIMA1-207ENST00000551486 IFI27P40305 119 aaPredicted RBP1.38□□□□□ -2.19
LIMA1-207ENST00000551486 SNRPGP62308 76 aaKnown RBP1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms