RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 ATP1A1-AS1Q5TC04 95 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 SPTSSAQ969W0 71 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 COX14Q96I36 57 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 OTORQ9NRC9 128 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 PEMTQ9UBM1 199 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 DNHD1Q96M86 4753 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 LRP4O75096 1905 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 RAI1Q7Z5J4 1906 aaPredicted RBP7.19□□□□□ -1.26
PTCH1-220ENST00000550136 TRBV7-1A0A0A6YYK4 115 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 C17orf98A8MV24 154 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 FCGR3BO75015 233 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 NDUFA3O95167 84 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 PLAUP00749 431 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 BRWD1-AS2P59051 145 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 PCBD1P61457 104 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 CD177Q8N6Q3 437 aa7.19□□□□□ -1.26
PTCH1-220ENST00000550136 CSMD1Q96PZ7 3565 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 TRGV8A0A0C4DH27 118 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 A0A1W2PQD3 144 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 IGHV3-30P01768 117 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 IGHV3-30-5P0DP03 117 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 FP248Q71RG6 208 aaPredicted RBP7.18□□□□□ -1.26
PTCH1-220ENST00000550136 LINC00596Q86U02 117 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 PAXXQ9BUH6 204 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 SCRG1O75711 98 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 IGHV4-39P01824 125 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 HOXB4P17483 251 aaPredicted RBP7.18□□□□□ -1.26
PTCH1-220ENST00000550136 SYNJ2BPP57105 145 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 LOXL3P58215 753 aa7.18□□□□□ -1.26
PTCH1-220ENST00000550136 ADGRG4Q8IZF6 3080 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 A0A0B4J2C4 111 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 F8VRH5 84 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 COX6B1P14854 86 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 CKS2P33552 79 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 IGLV3-21P80748 117 aaPredicted RBP7.17□□□□□ -1.26
PTCH1-220ENST00000550136 ZNF837Q96EG3 531 aaPredicted RBP7.17□□□□□ -1.26
PTCH1-220ENST00000550136 ZFHX3Q15911 3703 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 TRGV5A0A0B4J1U4 118 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 TRAV12-1A0A0B4J245 112 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 CLPSP04118 112 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 TCRAP04437 139 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 FHL2Q14192 279 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 C3orf36Q3SXR2 165 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 C9orf139Q6ZV77 190 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 C17orf82Q86X59 251 aaPredicted RBP7.17□□□□□ -1.26
PTCH1-220ENST00000550136 RNF182Q8N6D2 247 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 SRSF12Q8WXF0 261 aaKnown RBP7.17□□□□□ -1.26
PTCH1-220ENST00000550136 FXYD5Q96DB9 178 aa7.17□□□□□ -1.26
PTCH1-220ENST00000550136 CELSR1Q9NYQ6 3014 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 NAV3Q8IVL0 2385 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 A0A0J9YY99 117 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 TRBV30A0A0K0K1B3 111 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 IGHV3-13P01766 116 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 MORN5Q5VZ52 161 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 Q8NA96 180 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 TMEM263Q8WUH6 116 aaKnown RBP7.16□□□□□ -1.26
PTCH1-220ENST00000550136 TRAV26-2A0A0B4J265 109 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 FAM201AQ5SY85 155 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 Q86TA4 180 aa7.16□□□□□ -1.26
PTCH1-220ENST00000550136 SPENQ96T58 3664 aaKnown RBP7.15□□□□□ -1.27
PTCH1-220ENST00000550136 ZNF134P52741 427 aa7.15□□□□□ -1.27
PTCH1-220ENST00000550136 TMEM243Q9BU79 118 aa7.15□□□□□ -1.27
PTCH1-220ENST00000550136 DYNLRB1Q9NP97 96 aa7.15□□□□□ -1.27
PTCH1-220ENST00000550136 SVILO95425 2214 aa7.14□□□□□ -1.27
PTCH1-220ENST00000550136 SPG11Q96JI7 2443 aa7.14□□□□□ -1.27
PTCH1-220ENST00000550136 KNCNA6PVL3 124 aa7.14□□□□□ -1.27
PTCH1-220ENST00000550136 H0YGG7 62 aa7.14□□□□□ -1.27
PTCH1-220ENST00000550136 ZNF714Q96N38 554 aa7.14□□□□□ -1.27
PTCH1-220ENST00000550136 FOXB1Q99853 325 aa7.14□□□□□ -1.27
PTCH1-220ENST00000550136 TET2Q6N021 2002 aaPredicted RBP7.14□□□□□ -1.27
PTCH1-220ENST00000550136 CCDC168Q8NDH2 2452 aa7.14□□□□□ -1.27
PTCH1-220ENST00000550136 IGKV1OR2-108A0A075B7D4 117 aa7.13□□□□□ -1.27
PTCH1-220ENST00000550136 MRPS36P82909 103 aaKnown RBP7.13□□□□□ -1.27
PTCH1-220ENST00000550136 SLC25A29Q8N8R3 303 aa7.13□□□□□ -1.27
PTCH1-220ENST00000550136 ANKHD1Q8IWZ3 2542 aaKnown RBP7.13□□□□□ -1.27
PTCH1-220ENST00000550136 IGHV1OR21-1A0A087WYE8 117 aa7.13□□□□□ -1.27
PTCH1-220ENST00000550136 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.13□□□□□ -1.27
PTCH1-220ENST00000550136 SMKR1H3BMG3 65 aa7.13□□□□□ -1.27
PTCH1-220ENST00000550136 Q6ZRU5 148 aa7.13□□□□□ -1.27
PTCH1-220ENST00000550136 COPS9Q8WXC6 57 aa7.13□□□□□ -1.27
PTCH1-220ENST00000550136 EEF1AKMT3Q96AZ1 226 aa7.13□□□□□ -1.27
PTCH1-220ENST00000550136 BEX4Q9NWD9 120 aaPredicted RBP7.13□□□□□ -1.27
PTCH1-220ENST00000550136 TRBV6-1A0A0K0K1D8 114 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 IQCF6A8MYZ5 107 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 RHOHQ15669 191 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 Q1RN00 199 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 FLVCR1-AS1Q8TAF5 88 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 SLC25A15Q9Y619 301 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 AKAP9Q99996 3911 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 EIF4EBP3O60516 100 aaPredicted RBP7.12□□□□□ -1.27
PTCH1-220ENST00000550136 PF4P02776 101 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 PCOLCEQ15113 449 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 PRR15Q8IV56 129 aa7.12□□□□□ -1.27
PTCH1-220ENST00000550136 TRIAP1O43715 76 aa7.11□□□□□ -1.27
PTCH1-220ENST00000550136 COX7A2P2O60397 106 aa7.11□□□□□ -1.27
PTCH1-220ENST00000550136 ERCC8Q13216 396 aa7.11□□□□□ -1.27
PTCH1-220ENST00000550136 C10orf113Q5VZT2 155 aa7.11□□□□□ -1.27
PTCH1-220ENST00000550136 LILRA5A6NI73 299 aa7.11□□□□□ -1.27
PTCH1-220ENST00000550136 LINC00473A8K010 186 aa7.11□□□□□ -1.27
PTCH1-220ENST00000550136 H7C2G1 150 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms