RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CRYGDP07320 174 aa11.06□□□□□ -0.64
VPS29-207ENST00000549970 RHOHQ15669 191 aa11.06□□□□□ -0.64
VPS29-207ENST00000549970 Q86TA4 180 aa11.06□□□□□ -0.64
VPS29-207ENST00000549970 TRBV6-4A0A1B0GX49 114 aa11.05□□□□□ -0.64
VPS29-207ENST00000549970 MAP1LC3B2A6NCE7 125 aa11.05□□□□□ -0.64
VPS29-207ENST00000549970 SMLR1H3BR10 107 aa11.05□□□□□ -0.64
VPS29-207ENST00000549970 K7EP13 123 aa11.05□□□□□ -0.64
VPS29-207ENST00000549970 CIDEAO60543 219 aa11.05□□□□□ -0.64
VPS29-207ENST00000549970 S100A4P26447 101 aaKnown RBP11.05□□□□□ -0.64
VPS29-207ENST00000549970 MAP1LC3BQ9GZQ8 125 aa11.05□□□□□ -0.64
VPS29-207ENST00000549970 CYTL1Q9NRR1 136 aa11.05□□□□□ -0.64
VPS29-207ENST00000549970 IGHV3-38A0A0C4DH36 116 aa11.04□□□□□ -0.64
VPS29-207ENST00000549970 FABP5P3A8MUU1 101 aa11.04□□□□□ -0.64
VPS29-207ENST00000549970 TIRAPP58753 221 aa11.04□□□□□ -0.64
VPS29-207ENST00000549970 C10orf126Q8N4M7 172 aa11.04□□□□□ -0.64
VPS29-207ENST00000549970 HIST1H2BAQ96A08 127 aa11.04□□□□□ -0.64
VPS29-207ENST00000549970 PTH2Q96A98 100 aa11.04□□□□□ -0.64
VPS29-207ENST00000549970 NKX6-2Q9C056 277 aaPredicted RBP11.04□□□□□ -0.64
VPS29-207ENST00000549970 A0A087WTM6 91 aa11.03□□□□□ -0.64
VPS29-207ENST00000549970 ASIPP42127 132 aa11.03□□□□□ -0.64
VPS29-207ENST00000549970 OR10J3Q5JRS4 329 aa11.03□□□□□ -0.64
VPS29-207ENST00000549970 PGPEP1Q9NXJ5 209 aa11.03□□□□□ -0.64
VPS29-207ENST00000549970 TRAV8-6A0A0B4J262 113 aa11.02□□□□□ -0.65
VPS29-207ENST00000549970 MGST1P10620 155 aaKnown RBP11.02□□□□□ -0.65
VPS29-207ENST00000549970 LGALSLQ3ZCW2 172 aaPredicted RBP11.02□□□□□ -0.65
VPS29-207ENST00000549970 ZC2HC1AQ96GY0 325 aa11.02□□□□□ -0.65
VPS29-207ENST00000549970 PARLQ9H300 379 aa11.02□□□□□ -0.65
VPS29-207ENST00000549970 A8MWV9 139 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 B4DEV8 164 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 H3BVH4 76 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 M0R036 132 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 FHITP49789 147 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 CRIP1P50238 77 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 UBE2G1P62253 170 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 LINC01556Q5JQF7 62 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 CST9LP1Q5W188 147 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 Q8N1X5 172 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 SCRT2Q9NQ03 307 aa11.01□□□□□ -0.65
VPS29-207ENST00000549970 SH2D1AO60880 128 aa11□□□□□ -0.65
VPS29-207ENST00000549970 LELP1Q5T871 98 aa11□□□□□ -0.65
VPS29-207ENST00000549970 CDPF1Q6NVV7 123 aa11□□□□□ -0.65
VPS29-207ENST00000549970 Q6ZSN1 163 aa11□□□□□ -0.65
VPS29-207ENST00000549970 ATP6V0E2Q8NHE4 81 aa11□□□□□ -0.65
VPS29-207ENST00000549970 STOML3Q8TAV4 291 aa11□□□□□ -0.65
VPS29-207ENST00000549970 FMC1Q96HJ9 113 aa11□□□□□ -0.65
VPS29-207ENST00000549970 GTSF1LQ9H1H1 148 aa11□□□□□ -0.65
VPS29-207ENST00000549970 JPT2Q9H910 190 aa11□□□□□ -0.65
VPS29-207ENST00000549970 IL36BQ9NZH7 164 aa11□□□□□ -0.65
VPS29-207ENST00000549970 GRIFINA4D1Z8 144 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 GAGE12JA6NER3 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 IGHV3-30P01768 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 IGHV3-33P01772 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 IGHV3-30-3P0DP02 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 IGHV3-30-5P0DP03 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 GAGE1Q13065 139 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 GAGE4Q13068 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 GAGE5Q13069 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 GAGE13Q4V321 117 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 ZFP2Q6ZN57 461 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 ZFP30Q9Y2G7 519 aa10.99□□□□□ -0.65
VPS29-207ENST00000549970 KRBOX1C9JBD0 128 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 PSCAO43653 123 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 ARMS2P0C7Q2 107 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 AKR1C3P42330 323 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 ZNF345Q14585 488 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 PIK3CD-AS1Q5SR53 167 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 FAM162BQ5T6X4 162 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 DMRTA1Q5VZB9 504 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 KCNRGQ8N5I3 272 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 SAMD10Q9BYL1 202 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 Q9HAA7 133 aa10.98□□□□□ -0.65
VPS29-207ENST00000549970 TMSB15BA0A087X1C1 80 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 A0A1B0GV50 99 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 IBA57-AS1B1ANH7 110 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 PAGE4O60829 102 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 COX8CQ7Z4L0 72 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 SYT8Q8NBV8 401 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 FAM213BQ8TBF2 198 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 SFT2D1Q8WV19 159 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 TCEAL7Q9BRU2 100 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 BOLA1Q9Y3E2 137 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 FAT1Q14517 4588 aa10.97□□□□□ -0.65
VPS29-207ENST00000549970 LTAP01374 205 aa10.96□□□□□ -0.65
VPS29-207ENST00000549970 ZNF674Q2M3X9 581 aa10.96□□□□□ -0.65
VPS29-207ENST00000549970 DNLZQ5SXM8 178 aa10.96□□□□□ -0.65
VPS29-207ENST00000549970 FAM74A4Q5TZK3 123 aa10.96□□□□□ -0.65
VPS29-207ENST00000549970 UFSP1Q6NVU6 142 aa10.96□□□□□ -0.65
VPS29-207ENST00000549970 C14orf178Q8N769 122 aaPredicted RBP10.96□□□□□ -0.65
VPS29-207ENST00000549970 OR11H4Q8NGC9 324 aa10.96□□□□□ -0.65
VPS29-207ENST00000549970 ZNF471Q9BX82 626 aaPredicted RBP10.96□□□□□ -0.65
VPS29-207ENST00000549970 Q9UF83 564 aa10.96□□□□□ -0.65
VPS29-207ENST00000549970 TRBV6-1A0A0K0K1D8 114 aa10.95□□□□□ -0.66
VPS29-207ENST00000549970 SEC11BP0C7V7 166 aa10.95□□□□□ -0.66
VPS29-207ENST00000549970 LINC00694P0DN24 101 aa10.95□□□□□ -0.66
VPS29-207ENST00000549970 KRTAP10-1P60331 282 aa10.95□□□□□ -0.66
VPS29-207ENST00000549970 Q8N3U1 123 aa10.95□□□□□ -0.66
VPS29-207ENST00000549970 PHLDA3Q9Y5J5 127 aa10.95□□□□□ -0.66
VPS29-207ENST00000549970 A0A087WWL8 130 aa10.94□□□□□ -0.66
VPS29-207ENST00000549970 KANTRA0A1W2PQU2 76 aa10.94□□□□□ -0.66
VPS29-207ENST00000549970 HMSDA8MTL9 139 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms