RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 NIT1Q86X76 327 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 Q8N1Y9 231 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 TPPP3Q9BW30 176 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 SCRT2Q9NQ03 307 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 TP53TG3Q9ULZ0 132 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 HLA-DRB4X5D2U9 266 aa4.62□□□□□ -1.67
SYNE1-239ENST00000545694 TMSB15BA0A087X1C1 80 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 PRSS47A8MTI9 375 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 K7EMI3 77 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 NXPH4O95158 308 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 ZNF688P0C7X2 276 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 CKS2P33552 79 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 PROK1P58294 105 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 PIK3CD-AS1Q5SR53 167 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 SPANXN1Q5VSR9 72 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 ZNF575Q86XF7 245 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 NDUFA11Q86Y39 141 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 DLX4Q92988 240 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-239ENST00000545694 MRAP2Q96G30 205 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 RAX2Q96IS3 184 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 PRELID3AQ96N28 172 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 LINC00467Q9BRT7 94 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 NXT2Q9NPJ8 142 aaKnown RBP4.61□□□□□ -1.67
SYNE1-239ENST00000545694 GSN-AS1Q9NRJ2 163 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 PHLDA3Q9Y5J5 127 aa4.61□□□□□ -1.67
SYNE1-239ENST00000545694 MUC4Q99102 2169 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 IGKV3-7A0A075B6H7 116 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 TRGV11A0A075B6L2 103 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 LINC01546A6NGU7 62 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 LINC01549A6NIU2 74 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 D6R8Y8 96 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 TSTD3H0UI37 97 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 M0R381 172 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 G0S2P27469 103 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 RNASE4P34096 147 aaKnown RBP4.6□□□□□ -1.67
SYNE1-239ENST00000545694 PMCHL1Q16048 86 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 ADAMTSL5Q6ZMM2 481 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 Q71RC1 249 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-239ENST00000545694 FA2HQ7L5A8 372 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 PRSS3P2Q8NHM4 247 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 PTH2Q96A98 100 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 AP1S3Q96PC3 154 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 NDUFAF3Q9BU61 184 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 MAP1LC3AQ9H492 121 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 DPH3P1Q9H4G8 78 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 C11orf21Q9P2W6 132 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 HSPB8Q9UJY1 196 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 NOTCH3Q9UM47 2321 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 F8P00451 2351 aa4.6□□□□□ -1.67
SYNE1-239ENST00000545694 IGHV1OR15-1A0A075B7D0 117 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 C20orf202A1L168 122 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 F6UB75 175 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 H3BMM0 161 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 M0R2Z0 102 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 CRXO43186 299 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 NUPR1O60356 82 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 CRLF1O75462 422 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 LEPROTL1O95214 131 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 SCGB1D1O95968 90 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 ZNF705DP0CH99 300 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 ZNF705BP0CI00 300 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 CD28P10747 220 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 BTF3P20290 206 aaKnown RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 TFPI2P48307 235 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 INSL3P51460 131 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 PKIAP61925 76 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 NUTF2P61970 127 aaKnown RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 DEFB136Q30KP8 78 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 ANXA2RQ3ZCQ2 193 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 MRPL51Q4U2R6 128 aaKnown RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 PRR9Q5T870 116 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 RNASEKQ6P5S7 137 aaKnown RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 AMTNQ6UX39 209 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 C18orf65Q6ZTR6 163 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 AMN1Q8IY45 258 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 TMEM61Q8N0U2 210 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 POM121L12Q8N7R1 296 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 OR10AG1Q8NH19 301 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 RCHY1Q96PM5 261 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 CITED2Q99967 270 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-239ENST00000545694 C20orf78Q9BR46 151 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 NAGKQ9UJ70 344 aa4.59□□□□□ -1.67
SYNE1-239ENST00000545694 JMJD1CQ15652 2540 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 TEP1Q99973 2627 aaKnown RBP4.58□□□□□ -1.68
SYNE1-239ENST00000545694 OR11H12B2RN74 326 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 H3BVH4 76 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 SMIM17P0DL12 118 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 EDN2P20800 178 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 DEFB131AP59861 70 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 RPL32P62910 135 aaKnown RBP4.58□□□□□ -1.68
SYNE1-239ENST00000545694 CD300EQ496F6 205 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-239ENST00000545694 PET117Q6UWS5 81 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 Q6ZWC4 215 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 SPATA12Q7Z6I5 190 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 RNF185Q96GF1 192 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 C9orf85Q96MD7 179 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 TMEM70Q9BUB7 260 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 MAP1LC3CQ9BXW4 147 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 MAP6D1Q9H9H5 199 aa4.58□□□□□ -1.68
SYNE1-239ENST00000545694 ZNF256Q9Y2P7 627 aaPredicted RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms