RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 LYZL1Q6UWQ5 148 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 FAM159AQ6UWV7 190 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 LINC00518Q8N0U6 118 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 FAM19A4Q96LR4 140 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 FAM110AQ9BQ89 295 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 C20orf144Q9BQM9 153 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 TPPP3Q9BW30 176 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 TMEM191AQ9H0A3 160 aa6.21□□□□□ -1.42
CHD4-208ENST00000540960 HSPG2P98160 4391 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 A0A0J9YX75 114 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 KLLNB2CW77 178 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 HSBP1O75506 76 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 FABP4P15090 132 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 SRIP30626 198 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 C10orf99Q6UWK7 81 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 WFDC3Q8IUB2 231 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 ORMDL3Q8N138 153 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 ZFAND2AQ8N6M9 145 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 C20orf173Q96LM9 149 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 HIST1H2BLQ99880 126 aa6.2□□□□□ -1.42
CHD4-208ENST00000540960 ALKBH7Q9BT30 221 aaPredicted RBP6.2□□□□□ -1.42
CHD4-208ENST00000540960 MCRIP2Q9BUT9 160 aaKnown RBP6.2□□□□□ -1.42
CHD4-208ENST00000540960 SSBP4Q9BWG4 385 aaPredicted RBP6.2□□□□□ -1.42
CHD4-208ENST00000540960 TRGV11A0A075B6L2 103 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 C7orf71A4D174 169 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 SNAI2O43623 268 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 CSN3P07498 182 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 ZNF688P0C7X2 276 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 RNASE4P34096 147 aaKnown RBP6.19□□□□□ -1.42
CHD4-208ENST00000540960 CDKN1BP46527 198 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 INSL3P51460 131 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 SLURP1P55000 103 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 NUTF2P61970 127 aaKnown RBP6.19□□□□□ -1.42
CHD4-208ENST00000540960 IQCJQ1A5X6 159 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 DEFB114Q30KQ6 69 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 TDRG1Q3Y452 100 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 SPANXN1Q5VSR9 72 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 FAM104BQ5XKR9 115 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 C18orf65Q6ZTR6 163 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 SYT8Q8NBV8 401 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 OR10D4PQ8NGN7 298 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 RAX2Q96IS3 184 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 C12orf57Q99622 126 aa6.19□□□□□ -1.42
CHD4-208ENST00000540960 ZMAT5Q9UDW3 170 aaKnown RBP6.19□□□□□ -1.42
CHD4-208ENST00000540960 IGKV3-7A0A075B6H7 116 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 TMSB15BA0A087X1C1 80 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 A0A1B0GVY2 172 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 ARMS2P0C7Q2 107 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 GZMBP10144 247 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 HLA-DRB4P13762 266 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 G0S2P27469 103 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 TFPI2P48307 235 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 ZNF80P51504 273 aaPredicted RBP6.18□□□□□ -1.42
CHD4-208ENST00000540960 SLAQ13239 276 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 DLX4Q92988 240 aaPredicted RBP6.18□□□□□ -1.42
CHD4-208ENST00000540960 MRAP2Q96G30 205 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 PHLDA3Q9Y5J5 127 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 HLA-DRB4X5D2U9 266 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 VPS13DQ5THJ4 4388 aa6.18□□□□□ -1.42
CHD4-208ENST00000540960 DYNC1H1Q14204 4646 aaKnown RBP6.18□□□□□ -1.42
CHD4-208ENST00000540960 LINC01549A6NIU2 74 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 A8MTW9 85 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 K7EMI3 77 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 SERF1AO75920 110 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 LINC00614P0C842 121 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 SMIM17P0DL12 118 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 NTF3P20783 257 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 CKS2P33552 79 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 JOSD1Q15040 202 aaPredicted RBP6.17□□□□□ -1.42
CHD4-208ENST00000540960 RBMY1FQ15415 496 aaKnown RBP6.17□□□□□ -1.42
CHD4-208ENST00000540960 PIK3CD-AS1Q5SR53 167 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 FA2HQ7L5A8 372 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 PRSS3P2Q8NHM4 247 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 C18orf32Q8TCD1 76 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 DUX3Q96PT4 197 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 NDUFAF3Q9BU61 184 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 NXT2Q9NPJ8 142 aaKnown RBP6.17□□□□□ -1.42
CHD4-208ENST00000540960 HSPB8Q9UJY1 196 aa6.17□□□□□ -1.42
CHD4-208ENST00000540960 ZNF256Q9Y2P7 627 aaPredicted RBP6.17□□□□□ -1.42
CHD4-208ENST00000540960 IGKV3D-20A0A0C4DH25 116 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 C20orf202A1L168 122 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 GRIFINA4D1Z8 144 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 OR11H12B2RN74 326 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 ZNF324O75467 553 aaPredicted RBP6.16□□□□□ -1.42
CHD4-208ENST00000540960 AMTP48728 403 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 KIAA1644Q3SXP7 199 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 GDF5OSQ5U4N7 250 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 TMEM256Q8N2U0 113 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 PRELID3AQ96N28 172 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 AP1S3Q96PC3 154 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 LINC00467Q9BRT7 94 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 MAP1LC3AQ9H492 121 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 NAGKQ9UJ70 344 aa6.16□□□□□ -1.42
CHD4-208ENST00000540960 IGHV1OR15-1A0A075B7D0 117 aa6.15□□□□□ -1.42
CHD4-208ENST00000540960 H3BMM0 161 aa6.15□□□□□ -1.42
CHD4-208ENST00000540960 TCAPO15273 167 aa6.15□□□□□ -1.42
CHD4-208ENST00000540960 DEFB131AP59861 70 aa6.15□□□□□ -1.42
CHD4-208ENST00000540960 DEFB136Q30KP8 78 aa6.15□□□□□ -1.42
CHD4-208ENST00000540960 PDZD11Q5EBL8 140 aa6.15□□□□□ -1.42
CHD4-208ENST00000540960 GFI1BQ5VTD9 330 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms