RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TMSB15BA0A087X1C1 80 aa8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 PPP1R2P9O14990 202 aa8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 S100A4P26447 101 aaKnown RBP8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 CRIP1P50238 77 aa8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 RPS20P60866 119 aaKnown RBP8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 ANXA2RQ3ZCQ2 193 aa8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 C10orf91Q5T1B1 145 aa8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 FAM231DQ6ZW35 169 aa8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 RPP21Q9H633 154 aaKnown RBP8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 OSTCQ9NRP0 149 aa8.91□□□□□ -0.98
CLSTN3-208ENST00000538933 C19orf71A6NCJ1 209 aa8.9□□□□□ -0.98
CLSTN3-208ENST00000538933 ATP6V1G1O75348 118 aa8.9□□□□□ -0.98
CLSTN3-208ENST00000538933 ZNF324O75467 553 aaPredicted RBP8.9□□□□□ -0.98
CLSTN3-208ENST00000538933 GIG44P09565 113 aaPredicted RBP8.9□□□□□ -0.98
CLSTN3-208ENST00000538933 RRN3P1Q2M238 152 aa8.9□□□□□ -0.98
CLSTN3-208ENST00000538933 C1orf158Q8N1D5 194 aa8.9□□□□□ -0.98
CLSTN3-208ENST00000538933 ANAPC16Q96DE5 110 aa8.9□□□□□ -0.98
CLSTN3-208ENST00000538933 FAT1Q14517 4588 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 RBMY1A1P0DJD3 496 aaKnown RBP8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 RBMY1CP0DJD4 496 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 S100A1P23297 94 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 RPL19P84098 196 aaKnown RBP8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 RHEBQ15382 184 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 RBMY1FQ15415 496 aaKnown RBP8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 RNF212Q495C1 297 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 LINC01559Q495D7 138 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 Q6ZQT7 251 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 Q8NAQ8 132 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 CSNK1G2-AS1Q8NCQ2 148 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 CLRN3Q8NCR9 226 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 SCRT2Q9NQ03 307 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 RPS10P5Q9NQ39 176 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 TIMM8BQ9Y5J9 83 aaPredicted RBP8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 VPS13BQ7Z7G8 4022 aa8.89□□□□□ -0.99
CLSTN3-208ENST00000538933 IGKV3D-20A0A0C4DH25 116 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 GRIFINA4D1Z8 144 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 A8MWL6 223 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 P0DMU3 169 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 FAM231AP0DMU4 169 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 FAM231CP0DMU5 169 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 ASIPP42127 132 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 ZNF415Q09FC8 603 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 ZNF705AQ6ZN79 300 aaPredicted RBP8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 Q6ZTC4 211 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 TPPP3Q9BW30 176 aa8.88□□□□□ -0.99
CLSTN3-208ENST00000538933 NACAE9PAV3 2078 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 TRAV10A0A0B4J240 114 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 C7orf77A4D0Y5 90 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 SMIM9A6NGZ8 99 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 C16orf90A8MZG2 172 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 SNURFLB1AK76 121 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 TYMSP04818 313 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 CT83Q5H943 113 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 BORCS7Q96B45 105 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 C16orf74Q96GX8 76 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 LINC00467Q9BRT7 94 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 CTDSP1Q9GZU7 261 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 C11orf21Q9P2W6 132 aa8.87□□□□□ -0.99
CLSTN3-208ENST00000538933 GNRH2O43555 120 aa8.86□□□□□ -0.99
CLSTN3-208ENST00000538933 GZMBP10144 247 aa8.86□□□□□ -0.99
CLSTN3-208ENST00000538933 TDRG1Q3Y452 100 aa8.86□□□□□ -0.99
CLSTN3-208ENST00000538933 TMEM263Q8WUH6 116 aaKnown RBP8.86□□□□□ -0.99
CLSTN3-208ENST00000538933 NEU1Q99519 415 aa8.86□□□□□ -0.99
CLSTN3-208ENST00000538933 V9GYV3 84 aa8.86□□□□□ -0.99
CLSTN3-208ENST00000538933 H3BVH4 76 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 CXCL1P09341 107 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 MIFP14174 115 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 EMP1P54849 157 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 KCNIP4Q6PIL6 250 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 ZNF493Q6ZR52 646 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 TSKUQ8WUA8 353 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 TP53TG3Q9ULZ0 132 aa8.85□□□□□ -0.99
CLSTN3-208ENST00000538933 IGLV2-18A0A075B6J9 118 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 IGHV3-16A0A0C4DH30 117 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 A0A1W2PPQ1 181 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 PRM2P04554 102 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 AZU1P20160 251 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 S100PP25815 95 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 TCL1AP56279 114 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 FER1L6-AS1Q8NA97 138 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 IL36BQ9NZH7 164 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 PHLDA3Q9Y5J5 127 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 X6R8D5 127 aa8.84□□□□□ -0.99
CLSTN3-208ENST00000538933 A0A087WWC5 75 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 IGHV4-28A0A0C4DH34 117 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 ARMS2P0C7Q2 107 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 SSTP61278 116 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 TNP2Q05952 138 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 SYT8Q8NBV8 401 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 PGLYRP4Q96LB8 373 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 GFRA4Q9GZZ7 299 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 GSN-AS1Q9NRJ2 163 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 MDFICQ9P1T7 246 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 NAT8BQ9UHF3 227 aa8.83□□□□□ -1
CLSTN3-208ENST00000538933 FAM231BA6NCW3 169 aa8.82□□□□□ -1
CLSTN3-208ENST00000538933 HIGD1CA8MV81 97 aa8.82□□□□□ -1
CLSTN3-208ENST00000538933 C12orf74Q32Q52 190 aa8.82□□□□□ -1
CLSTN3-208ENST00000538933 C1orf134Q5TEV5 83 aa8.82□□□□□ -1
CLSTN3-208ENST00000538933 SPANXN1Q5VSR9 72 aa8.82□□□□□ -1
CLSTN3-208ENST00000538933 RNASE8Q8TDE3 154 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms