RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 BAGE2Q86Y30 109 aa8.98□□□□□ -0.97
VPS28-216ENST00000533806 IL36BQ9NZH7 164 aa8.98□□□□□ -0.97
VPS28-216ENST00000533806 HECTD4Q9Y4D8 3996 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 RS1O15537 224 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 PAX4O43316 350 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 IGLV2-8P01709 118 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 CCL18P55774 89 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 ZNF506Q5JVG8 444 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 CFAP126Q5VTH2 177 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 UBE2DNLQ8IWF7 75 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 NHLRC2Q8NBF2 726 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 OR4C5Q8NGB2 326 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 SCRT2Q9NQ03 307 aa8.97□□□□□ -0.97
VPS28-216ENST00000533806 C9JCJ5 164 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 M0R036 132 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 PDE6DO43924 150 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 IFNA1P01562 189 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 GATA1P15976 413 aaPredicted RBP8.96□□□□□ -0.98
VPS28-216ENST00000533806 TAGLN2P37802 199 aaKnown RBP8.96□□□□□ -0.98
VPS28-216ENST00000533806 ASIPP42127 132 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 BLOC1S1P78537 153 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 UPK3BQ9BT76 320 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 VAX2Q9UIW0 290 aa8.96□□□□□ -0.98
VPS28-216ENST00000533806 NACAE9PAV3 2078 aa8.95□□□□□ -0.98
VPS28-216ENST00000533806 TRBV20OR9-2A0A075B6H5 130 aa8.95□□□□□ -0.98
VPS28-216ENST00000533806 TRGV4A0A0C4DH28 118 aa8.95□□□□□ -0.98
VPS28-216ENST00000533806 CIDEAO60543 219 aa8.95□□□□□ -0.98
VPS28-216ENST00000533806 ARMS2P0C7Q2 107 aa8.95□□□□□ -0.98
VPS28-216ENST00000533806 UFSP1Q6NVU6 142 aa8.95□□□□□ -0.98
VPS28-216ENST00000533806 IGLV2-18A0A075B6J9 118 aa8.94□□□□□ -0.98
VPS28-216ENST00000533806 RAB19A4D1S5 217 aa8.94□□□□□ -0.98
VPS28-216ENST00000533806 GRIFINA4D1Z8 144 aa8.94□□□□□ -0.98
VPS28-216ENST00000533806 CXCL1P09341 107 aa8.94□□□□□ -0.98
VPS28-216ENST00000533806 S100A4P26447 101 aaKnown RBP8.94□□□□□ -0.98
VPS28-216ENST00000533806 DMRTA1Q5VZB9 504 aa8.94□□□□□ -0.98
VPS28-216ENST00000533806 MRPS16Q9Y3D3 137 aaKnown RBP8.94□□□□□ -0.98
VPS28-216ENST00000533806 ICOSQ9Y6W8 199 aa8.94□□□□□ -0.98
VPS28-216ENST00000533806 H3BVH4 76 aa8.93□□□□□ -0.98
VPS28-216ENST00000533806 K7EQD1 137 aa8.93□□□□□ -0.98
VPS28-216ENST00000533806 M0R2N4 97 aa8.93□□□□□ -0.98
VPS28-216ENST00000533806 MRPL23Q16540 153 aaKnown RBP8.93□□□□□ -0.98
VPS28-216ENST00000533806 CENPWQ5EE01 88 aa8.93□□□□□ -0.98
VPS28-216ENST00000533806 ZFP2Q6ZN57 461 aa8.93□□□□□ -0.98
VPS28-216ENST00000533806 SMIM12Q96EX1 92 aa8.93□□□□□ -0.98
VPS28-216ENST00000533806 SSBP4Q9BWG4 385 aaPredicted RBP8.93□□□□□ -0.98
VPS28-216ENST00000533806 MED9Q9NWA0 146 aa8.93□□□□□ -0.98
VPS28-216ENST00000533806 TMSB15BA0A087X1C1 80 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 C19orf71A6NCJ1 209 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 RTL8CO15255 209 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 MED14OSP0DP75 135 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 RPL19P84098 196 aaKnown RBP8.92□□□□□ -0.98
VPS28-216ENST00000533806 LYPD5Q6UWN5 251 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 Q6ZSN1 163 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 SLC25A29Q8N8R3 303 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 PARLQ9H300 379 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 Q9H8V8 135 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 JPT2Q9H910 190 aa8.92□□□□□ -0.98
VPS28-216ENST00000533806 LOC100131303A0A0U1RQF7 123 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 NBDYA0A0U1RRE5 68 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 TRBV6-4A0A1B0GX49 114 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 RBFOX3A6NFN3 312 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 A8MWV9 139 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 NXPH4O95158 308 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 GYPEP15421 78 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 GNG4P50150 75 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 NEGR1Q7Z3B1 354 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 SAMD10Q9BYL1 202 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 PKD1P98161 4303 aa8.91□□□□□ -0.98
VPS28-216ENST00000533806 IGHV3-73A0A0B4J1V6 119 aa8.9□□□□□ -0.98
VPS28-216ENST00000533806 TMEM250H0YL14 139 aa8.9□□□□□ -0.98
VPS28-216ENST00000533806 SNAI2O43623 268 aa8.9□□□□□ -0.98
VPS28-216ENST00000533806 NDUFS6O75380 124 aaKnown RBP8.9□□□□□ -0.98
VPS28-216ENST00000533806 CRYGDP07320 174 aa8.9□□□□□ -0.98
VPS28-216ENST00000533806 PRR27Q6MZM9 219 aa8.9□□□□□ -0.98
VPS28-216ENST00000533806 SFRP2Q96HF1 295 aa8.9□□□□□ -0.98
VPS28-216ENST00000533806 KRTAP1-5Q9BYS1 174 aa8.9□□□□□ -0.98
VPS28-216ENST00000533806 OR5AL1P0C617 328 aa8.89□□□□□ -0.99
VPS28-216ENST00000533806 MGST1P10620 155 aaKnown RBP8.89□□□□□ -0.99
VPS28-216ENST00000533806 TEX261Q6UWH6 196 aa8.89□□□□□ -0.99
VPS28-216ENST00000533806 SYT8Q8NBV8 401 aa8.89□□□□□ -0.99
VPS28-216ENST00000533806 PHLDA3Q9Y5J5 127 aa8.89□□□□□ -0.99
VPS28-216ENST00000533806 K7EN84 100 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 IGLC6P0CF74 106 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 SRIP30626 198 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 TIRAPP58753 221 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 RHOHQ15669 191 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 LINC00336Q6ZUF6 198 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 OR10AG1Q8NH19 301 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 FAM210AQ96ND0 272 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 Q9UF83 564 aa8.88□□□□□ -0.99
VPS28-216ENST00000533806 A0A1W2PPQ1 181 aa8.87□□□□□ -0.99
VPS28-216ENST00000533806 M0R381 172 aa8.87□□□□□ -0.99
VPS28-216ENST00000533806 LINC00694P0DN24 101 aa8.87□□□□□ -0.99
VPS28-216ENST00000533806 SH2D6Q7Z4S9 175 aa8.87□□□□□ -0.99
VPS28-216ENST00000533806 ZFP82Q8N141 532 aa8.87□□□□□ -0.99
VPS28-216ENST00000533806 OCC1Q8TAD7 63 aa8.87□□□□□ -0.99
VPS28-216ENST00000533806 PCNPQ8WW12 178 aaKnown RBP8.87□□□□□ -0.99
VPS28-216ENST00000533806 PRADC1Q9BSG0 188 aa8.87□□□□□ -0.99
VPS28-216ENST00000533806 DNAH11Q96DT5 4516 aa8.86□□□□□ -0.99
VPS28-216ENST00000533806 PKHD1P08F94 4074 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms