RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 TMEM210A6NLX4 147 aa-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 KPNA3O00505 521 aaPredicted RBP-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 TAX1BP3O14907 124 aa-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 TRACP01848 142 aa-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 NPC2P61916 151 aa-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 TSGA13Q96PP4 275 aa-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 LXNQ9BS40 222 aa-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 PBDC1Q9BVG4 233 aa-4.56□□□□□ -3.14
RNU6-539P-201ENST00000516665 NUP210LQ5VU65 1888 aa-4.57□□□□□ -3.14
RNU6-539P-201ENST00000516665 A0A1W2PPV4 95 aa-4.57□□□□□ -3.14
RNU6-539P-201ENST00000516665 EEF1E1-BLOC1S5C9J1V9 151 aa-4.57□□□□□ -3.14
RNU6-539P-201ENST00000516665 OR8B8Q15620 311 aa-4.57□□□□□ -3.14
RNU6-539P-201ENST00000516665 Q6Q795 121 aa-4.57□□□□□ -3.14
RNU6-539P-201ENST00000516665 MAP1LC3AQ9H492 121 aa-4.57□□□□□ -3.14
RNU6-539P-201ENST00000516665 MRC1P22897 1456 aa-4.57□□□□□ -3.14
RNU6-539P-201ENST00000516665 ATP5HO75947 161 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 CRHP06850 196 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 POLR2JP52435 117 aaKnown RBP-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 ARPP19P56211 112 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 ARF6P62330 175 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 C1orf195Q5TG92 126 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 SFXN4Q6P4A7 337 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 CLEC2AQ6UVW9 174 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 SNX29P2Q8IUI4 249 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 CT55Q8WUE5 264 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 MRM2Q9UI43 246 aaKnown RBP-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 HPCAL4Q9UM19 191 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 MPC1Q9Y5U8 109 aa-4.58□□□□□ -3.14
RNU6-539P-201ENST00000516665 CCDC169A6NNP5 214 aa-4.59□□□□□ -3.14
RNU6-539P-201ENST00000516665 CXCL1P09341 107 aa-4.59□□□□□ -3.14
RNU6-539P-201ENST00000516665 FABP4P15090 132 aa-4.59□□□□□ -3.14
RNU6-539P-201ENST00000516665 UCHL3P15374 230 aa-4.59□□□□□ -3.14
RNU6-539P-201ENST00000516665 WRNQ14191 1432 aaPredicted RBP eCLIP-4.59□□□□□ -3.14
RNU6-539P-201ENST00000516665 OR51D1Q8NGF3 324 aa-4.59□□□□□ -3.14
RNU6-539P-201ENST00000516665 PPP1R2P1Q96PQ5 205 aa-4.59□□□□□ -3.14
RNU6-539P-201ENST00000516665 PATJQ8NI35 1801 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 BCORQ6W2J9 1755 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 LRRC37A2A6NM11 1700 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 PCF11O94913 1555 aaKnown RBP-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 CDC42BPGQ6DT37 1551 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 H0YJX3 145 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 EDF1O60869 148 aaKnown RBP-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 GGCTO75223 188 aaKnown RBP-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 IFNA4P05014 189 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 NAA20P61599 178 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 LYRM7Q5U5X0 104 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 PHF5AQ7RTV0 110 aaKnown RBP-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 BAGE3Q86Y29 109 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 MAP1LC3BQ9GZQ8 125 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 TVP23BQ9NYZ1 205 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 PKIGQ9Y2B9 76 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 CSMD2Q7Z408 3487 aa-4.6□□□□□ -3.15
RNU6-539P-201ENST00000516665 TULP4Q9NRJ4 1543 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 SSSCA1O60232 199 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 TMBIM6P55061 237 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 NDUFA6P56556 154 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 VAMP3Q15836 100 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 CST9Q5W186 159 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 Q6JHZ5 121 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 ATP6V1C2Q8NEY4 427 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 CLEC2BQ92478 149 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 IFI27L1Q96BM0 104 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 SERPINB11Q96P15 392 aa-4.61□□□□□ -3.15
RNU6-539P-201ENST00000516665 PTPRGP23470 1445 aa-4.62□□□□□ -3.15
RNU6-539P-201ENST00000516665 FREM2Q5SZK8 3169 aa-4.62□□□□□ -3.15
RNU6-539P-201ENST00000516665 GTF2A1P52655 376 aaPredicted RBP-4.62□□□□□ -3.15
RNU6-539P-201ENST00000516665 ZNHIT3Q15649 155 aaPredicted RBP-4.62□□□□□ -3.15
RNU6-539P-201ENST00000516665 CARD19Q96LW7 228 aa-4.62□□□□□ -3.15
RNU6-539P-201ENST00000516665 NT5C3AQ9H0P0 336 aa-4.62□□□□□ -3.15
RNU6-539P-201ENST00000516665 KIAA1107Q9UPP5 1409 aa-4.63□□□□□ -3.15
RNU6-539P-201ENST00000516665 A0A087WVE0 104 aa-4.63□□□□□ -3.15
RNU6-539P-201ENST00000516665 CASQ2O14958 399 aaPredicted RBP-4.63□□□□□ -3.15
RNU6-539P-201ENST00000516665 SAA1P0DJI8 122 aaPredicted RBP-4.63□□□□□ -3.15
RNU6-539P-201ENST00000516665 Q3ZCU0 254 aa-4.63□□□□□ -3.15
RNU6-539P-201ENST00000516665 MGAQ8IWI9 3026 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 ZNF236Q9UL36 1845 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 hCG_1818297A0A087WSY0 165 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 FTCDNL1E5RQL4 147 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 CST8O60676 142 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 E2F6O75461 281 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 RPL12P30050 165 aaKnown RBP-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 HADHBP55084 474 aaKnown RBP-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 USMG5Q96IX5 58 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 POLA1P09884 1462 aaPredicted RBP-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 ADGRL3Q9HAR2 1447 aa-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 ZCCHC11Q5TAX3 1644 aaKnown RBP-4.64□□□□□ -3.15
RNU6-539P-201ENST00000516665 IBTKQ9P2D0 1353 aaPredicted RBP-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 BIRC5O15392 142 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 IFNA5P01569 189 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 HIST3H3Q16695 136 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 LELP1Q5T871 98 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 RAB8BQ92930 207 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 KIF1BO60333 1816 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 UBR2Q8IWV8 1755 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 ADCY9O60503 1353 aa-4.65□□□□□ -3.15
RNU6-539P-201ENST00000516665 FAM236DA0A1B0GTK5 79 aa-4.66□□□□□ -3.16
RNU6-539P-201ENST00000516665 hADV38S2A0JD32 116 aa-4.66□□□□□ -3.16
RNU6-539P-201ENST00000516665 F8VRH5 84 aa-4.66□□□□□ -3.16
RNU6-539P-201ENST00000516665 HIST1H2BKO60814 126 aa-4.66□□□□□ -3.16
RNU6-539P-201ENST00000516665 IFNA21P01568 189 aa-4.66□□□□□ -3.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms