RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 NPC2P61916 151 aa8.27□□□□□ -1.08
LIMCH1-205ENST00000503057 RNF114Q9Y508 228 aa8.27□□□□□ -1.08
LIMCH1-205ENST00000503057 ZFHX2Q9C0A1 2572 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 TRAV8-4A0A0B4J246 113 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 GHRHP01286 108 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 ANKRD39Q53RE8 183 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 SPATA12Q7Z6I5 190 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 SUMO4Q6EEV6 95 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 RPL39LQ96EH5 51 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 TRAV12-1A0A0B4J245 112 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 F8W1H4 67 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 DEFB113Q30KQ7 82 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 PLCE1Q9P212 2302 aa8.27□□□□□ -1.09
LIMCH1-205ENST00000503057 TRBV20-1A0A075B6N2 111 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 RNF152Q8N8N0 203 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 A0A0U1RRA0 63 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 LINC00158P58513 81 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 TRAV13-1A0A0B4J241 112 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 IGLC6P0CF74 106 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 HTN3P15516 51 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 ZNF80P51504 273 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 K7EP13 123 aa8.26□□□□□ -1.09
LIMCH1-205ENST00000503057 IGHV3-16A0A0C4DH30 117 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 J3QQQ9 107 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 TMEM86BQ8N661 226 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 UNQ9165/PRO28630Q6UXU0 137 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 TOMM6Q96B49 74 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 IGLV2-11P01706 119 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 IGF1P05019 195 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 Q8N6K4 173 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 TRBV25-1A0A075B6N4 114 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 HIGD1BQ9P298 99 aa8.25□□□□□ -1.09
LIMCH1-205ENST00000503057 LEPROTO15243 131 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 C12orf74Q32Q52 190 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 K7ERJ3 54 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 SPRY2O43597 315 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 CRPP02741 224 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 PRIMA1Q86XR5 153 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 TRBV12-3P01733 135 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 ZFP2Q6ZN57 461 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 ZNRF2Q8NHG8 242 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 ZFAND3Q9H8U3 227 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 ABCA4P78363 2273 aa8.24□□□□□ -1.09
LIMCH1-205ENST00000503057 GAGE12JA6NER3 117 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 LINC01548A6NM66 108 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 C19orf84I3L1E1 186 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 GAGE4Q13068 117 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 GAGE5Q13069 117 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 Q6ZVH6 145 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 IGHV4OR15-8A0A075B7B6 117 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 A0A087WW49 117 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 CCL25O15444 150 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 SLURP1P55000 103 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 SPAG8Q99932 426 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 CKS1BP61024 79 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 C2orf82Q6UX34 121 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 OTOGLQ3ZCN5 2332 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 CRIP1P50238 77 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 ODF1Q14990 250 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 OVOL2Q9BRP0 275 aa8.23□□□□□ -1.09
LIMCH1-205ENST00000503057 DEFB136Q30KP8 78 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 DNAJC30Q96LL9 226 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 PRO1854Q9UHT4 67 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 NDUFA12Q9UI09 145 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 TSSC4Q9Y5U2 329 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 SMAD5-AS1Q9Y6J3 95 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 IGHV3-38A0A0C4DH36 116 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 U3KQK5 164 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 PRR14LQ5THK1 2151 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 TMEM243Q9BU79 118 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 HERVK_113P63121 156 aa8.22□□□□□ -1.09
LIMCH1-205ENST00000503057 C9JAW5 83 aa8.21□□□□□ -1.09
LIMCH1-205ENST00000503057 SS18Q15532 418 aa8.21□□□□□ -1.09
LIMCH1-205ENST00000503057 SLC25A20O43772 301 aa8.21□□□□□ -1.09
LIMCH1-205ENST00000503057 LOXL1Q08397 574 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 Q8N1Y9 231 aa8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 BAALCQ8WXS3 180 aa8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 SPANXA1Q9NS26 97 aa8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 TTC28Q96AY4 2481 aa8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 NBASA2RRP1 2371 aa8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 TAX1BP3O14907 124 aa8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 NRGNQ92686 78 aa8.21□□□□□ -1.1
LIMCH1-205ENST00000503057 CCL24O00175 119 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 DEFB130BP0DP73 79 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 DEFB130AP0DP74 79 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 AKAP6Q13023 2319 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 IGHG4P01861 327 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 C6orf226Q5I0X4 101 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 ODF3Q96PU9 254 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 TIMM17AQ99595 171 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 U3KQE9 123 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE7O76087 117 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE12FP0CL80 117 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE12GP0CL81 117 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 GAGE12IP0CL82 117 aa8.2□□□□□ -1.1
LIMCH1-205ENST00000503057 CFHR3Q02985 330 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 C4orf3Q8WVX3 66 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 A0A0J9YX75 114 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 PAX4O43316 350 aa8.19□□□□□ -1.1
LIMCH1-205ENST00000503057 ANAPC13Q9BS18 74 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms