RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 H3BRM9 83 aa7.4□□□□□ -1.23
CLIP1-204ENST00000501271 WFDC12Q8WWY7 111 aa7.4□□□□□ -1.23
CLIP1-204ENST00000501271 NAA38Q9BRA0 125 aaKnown RBP7.4□□□□□ -1.23
CLIP1-204ENST00000501271 C9orf118A6NHY6 69 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 K7EMT4 169 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 USP9YO00507 2555 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-204ENST00000501271 DOPEY2Q9Y3R5 2298 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 A6NJY4 79 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-204ENST00000501271 GATA3P23771 443 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 RBX1P62877 108 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 PSMG4Q5JS54 123 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 AP1S3Q96PC3 154 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 C20orf78Q9BR46 151 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 CHAC1Q9BUX1 264 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 ZNF580Q9UK33 172 aa7.39□□□□□ -1.23
CLIP1-204ENST00000501271 POLQO75417 2590 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 AGRNO00468 2067 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 TRBV25-1A0A075B6N4 114 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 H3BUT2 72 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 NXPH4O95158 308 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 ORMDL2Q53FV1 153 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 MAPK1IP1LQ8NDC0 245 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 RAB37Q96AX2 223 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 TOMM6Q96B49 74 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 HIGD1BQ9P298 99 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 ACACBO00763 2458 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 A0A096LNT2 108 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 FXYD2P54710 66 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 KIF25-AS1Q9Y6Z4 181 aa7.38□□□□□ -1.23
CLIP1-204ENST00000501271 MXRA5Q9NR99 2828 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 HLA-DRB4P13762 266 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 SLC25A16P16260 332 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 GCSHP23434 173 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 PLNP26678 52 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 ID1P41134 155 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 DSCR9P59020 149 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 LINC00315P59091 139 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 CFAP161Q6P656 301 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 NEGR1Q7Z3B1 354 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 MAPKAPK5-AS1Q8N8E1 139 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 LINC01356Q8N9X3 169 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 SCGB3A1Q96QR1 104 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 JPT2Q9H910 190 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 HLA-DRB4X5D2U9 266 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 CENPEQ02224 2701 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 TRAV12-1A0A0B4J245 112 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 TRAV12-3A0A0B4J271 114 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 F8VRH5 84 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 ZNF688P0C7X2 276 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 UFSP1Q6NVU6 142 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 FAM159AQ6UWV7 190 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 POM121L12Q8N7R1 296 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 CST9LQ9H4G1 147 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 CBY1Q9Y3M2 126 aa7.37□□□□□ -1.23
CLIP1-204ENST00000501271 GAGE10A6NGK3 116 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 H7C1H1 209 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 C2orf66Q6UXQ4 117 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 NEXN-AS1Q8NBZ9 246 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 CSTL1Q9H114 145 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 GAGE12BA1L429 117 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 K7EMI3 77 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 CD7P09564 240 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 C4orf48Q5BLP8 95 aa7.36□□□□□ -1.23
CLIP1-204ENST00000501271 CHTOPQ9Y3Y2 248 aaKnown RBP7.36□□□□□ -1.23
CLIP1-204ENST00000501271 ZFYVE26Q68DK2 2539 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 CR1P17927 2039 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 TRAV12-2A0A075B6T6 113 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 TGFAP01135 160 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 IGKV3-20P01619 116 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 SAMD13Q5VXD3 122 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 BAALCQ8WXS3 180 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 FAM208BQ5VWN6 2430 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 SORL1Q92673 2214 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 A0A087WWL8 130 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 K7EP34 96 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 K7ERJ3 54 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 SUMO4Q6EEV6 95 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 DEFB104AQ8WTQ1 72 aa7.35□□□□□ -1.23
CLIP1-204ENST00000501271 A0A0J9YX75 114 aa7.34□□□□□ -1.23
CLIP1-204ENST00000501271 PRB1P04280 392 aa7.34□□□□□ -1.23
CLIP1-204ENST00000501271 SYNJ2BPP57105 145 aa7.34□□□□□ -1.23
CLIP1-204ENST00000501271 CEND1Q8N111 149 aa7.34□□□□□ -1.23
CLIP1-204ENST00000501271 USP24Q9UPU5 2620 aa7.34□□□□□ -1.23
CLIP1-204ENST00000501271 IGHV4OR15-8A0A075B7B6 117 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 A0A087WW49 117 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 A0A1W2PPM0 123 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 TMEM89A2RUT3 159 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 K7EQG2 157 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 DUSP14O95147 198 aaKnown RBP7.33□□□□□ -1.24
CLIP1-204ENST00000501271 PPP1R17O96001 155 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 SMIM13P0DJ93 91 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 OCIAD2Q56VL3 154 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 GTF2H5Q6ZYL4 71 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 DUX5Q96PT3 197 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 VPREB3Q9UKI3 123 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 LRRK2Q5S007 2527 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 ZNF462Q96JM2 2506 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 IGHV3-16A0A0C4DH30 117 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 J3QLI3 93 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms