RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 IGHV1-58A0A0C4DH39 117 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 MYMXA0A1B0GTQ4 84 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 EPM2AB3EWF7 344 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 SCN3AQ9NY46 2000 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 TMEM131Q92545 1883 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 PKD1L1Q8TDX9 2849 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 TMEM14DPA8MWL7 114 aa4.03□□□□□ -1.76
USP54-216ENST00000498143 IGHV1-69DA0A0B4J2H0 117 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 LOC389332A0A1B0GUA5 103 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 RBAKDNA6NC62 111 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 C15orf65H3BRN8 121 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 TMEM256-PLSCR3K7ERE1 68 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 IGHV1-69P01742 117 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 PEBP1P30086 187 aaKnown RBP4.02□□□□□ -1.77
USP54-216ENST00000498143 CCL28Q9NRJ3 127 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 FAM90A26D6RGX4 464 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 OVOL3O00110 214 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 MED14OSP0DP75 135 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 MYCNOSP40205 109 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 SUPT4H1P63272 117 aaKnown RBP4.02□□□□□ -1.77
USP54-216ENST00000498143 UBL5Q9BZL1 73 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 PCSK5Q92824 1860 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 PAX4O43316 350 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 HLA-DMBP28068 263 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 VN1R4Q7Z5H5 301 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 SCRT2Q9NQ03 307 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 RNF7Q9UBF6 113 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 Q9UF83 564 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 TMEM30CPA0ZSE6 113 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 D6R8Y8 96 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 M0R135 149 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 ARL14EPLP0DKL9 152 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 IGHV1-2P23083 117 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 MUSTN1Q8IVN3 82 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 TOMM6Q96B49 74 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 ZNF799Q96GE5 643 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 IGF2BP2-AS1Q96M15 143 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 TPSG1Q9NRR2 321 aa4.02□□□□□ -1.77
USP54-216ENST00000498143 IGLV3-16A0A075B6K0 115 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 A0A0A0MQY5 61 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 PSCAO43653 123 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 APOHP02749 345 aaPredicted RBP4.01□□□□□ -1.77
USP54-216ENST00000498143 MPV17P39210 176 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 IFI27P40305 119 aaPredicted RBP4.01□□□□□ -1.77
USP54-216ENST00000498143 INSL3P51460 131 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 ZNF645Q8N7E2 425 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 MAPKAPK5-AS1Q8N8E1 139 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 IFI27L1Q96BM0 104 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 TENM2Q9NT68 2774 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 TRBV27A0A0K0K1C4 114 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 SCO2A0A1W2PP80 73 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 GATA2P23769 480 aaPredicted RBP4.01□□□□□ -1.77
USP54-216ENST00000498143 C20orf197Q8N268 126 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 RMI2Q96E14 147 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 MALRD1Q5VYJ5 2156 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 LINC01549A6NIU2 74 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 C17orf51A8MQB3 221 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 PLNP26678 52 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 LINC01590Q5TEZ4 76 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 ITLN1Q8WWA0 313 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 HEATR5AQ86XA9 2040 aa4.01□□□□□ -1.77
USP54-216ENST00000498143 MAP1AP78559 2803 aaPredicted RBP4□□□□□ -1.77
USP54-216ENST00000498143 A0A1W2PPR1 153 aa4□□□□□ -1.77
USP54-216ENST00000498143 VWC2LB2RUY7 222 aa4□□□□□ -1.77
USP54-216ENST00000498143 F2Z2F3 143 aa4□□□□□ -1.77
USP54-216ENST00000498143 F8W735 103 aaPredicted RBP4□□□□□ -1.77
USP54-216ENST00000498143 COX7A2LO14548 114 aa4□□□□□ -1.77
USP54-216ENST00000498143 IGHV4-38-2P0DP08 117 aa4□□□□□ -1.77
USP54-216ENST00000498143 PSMB8P28062 276 aa4□□□□□ -1.77
USP54-216ENST00000498143 Q6ZSV7 163 aa4□□□□□ -1.77
USP54-216ENST00000498143 LHFPL1Q86WI0 220 aa4□□□□□ -1.77
USP54-216ENST00000498143 NFAM1Q8NET5 270 aaPredicted RBP4□□□□□ -1.77
USP54-216ENST00000498143 SLC25A15Q9Y619 301 aa4□□□□□ -1.77
USP54-216ENST00000498143 WI2-2373I1.2A0A1W2PRP0 233 aa4□□□□□ -1.77
USP54-216ENST00000498143 K7ERS5 55 aa4□□□□□ -1.77
USP54-216ENST00000498143 SOCS3O14543 225 aa4□□□□□ -1.77
USP54-216ENST00000498143 C10orf128Q5T292 105 aa4□□□□□ -1.77
USP54-216ENST00000498143 UFSP1Q6NVU6 142 aa4□□□□□ -1.77
USP54-216ENST00000498143 ZIC4Q8N9L1 334 aa4□□□□□ -1.77
USP54-216ENST00000498143 PGLYRP4Q96LB8 373 aa4□□□□□ -1.77
USP54-216ENST00000498143 TRGV9Q99603 122 aa4□□□□□ -1.77
USP54-216ENST00000498143 TM2D2Q9BX73 214 aa4□□□□□ -1.77
USP54-216ENST00000498143 Q9H3A6 140 aa4□□□□□ -1.77
USP54-216ENST00000498143 WNT9BO14905 357 aa4□□□□□ -1.77
USP54-216ENST00000498143 NUPR1O60356 82 aa4□□□□□ -1.77
USP54-216ENST00000498143 CGB3P0DN86 165 aa4□□□□□ -1.77
USP54-216ENST00000498143 LAGE3Q14657 143 aa4□□□□□ -1.77
USP54-216ENST00000498143 EXOC3-AS1Q8N2X6 119 aa4□□□□□ -1.77
USP54-216ENST00000498143 LY96Q9Y6Y9 160 aa4□□□□□ -1.77
USP54-216ENST00000498143 TRAV4A0A0B4J268 109 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 CD28P10747 220 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 GNB1P62873 340 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 SLC25A29Q8N8R3 303 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 SCGB3A1Q96QR1 104 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 AMELYQ99218 206 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 CALYQ9NYX4 217 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 MDFICQ9P1T7 246 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 HIGD1BQ9P298 99 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 OBSL1O75147 1896 aa3.99□□□□□ -1.77
USP54-216ENST00000498143 LGALS9O00182 355 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms