RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 SMUG1Q53HV7 270 aa7.3□□□□□ -1.24
COL6A3-214ENST00000493608 NEGR1Q7Z3B1 354 aa7.3□□□□□ -1.24
COL6A3-214ENST00000493608 KCNS1Q96KK3 526 aa7.3□□□□□ -1.24
COL6A3-214ENST00000493608 TNFRSF18Q9Y5U5 241 aa7.3□□□□□ -1.24
COL6A3-214ENST00000493608 KIAA1109Q2LD37 5005 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 FAM74A7A6NL05 159 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 FHITP49789 147 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 ZNF876PQ49A33 203 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 ZFP69Q49AA0 526 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 TTC32Q5I0X7 151 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 DPPA3Q6W0C5 159 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 OR11H4Q8NGC9 324 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 KRTAP17-1Q9BYP8 105 aa7.29□□□□□ -1.24
COL6A3-214ENST00000493608 DNAH11Q96DT5 4516 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 IGHV3-73A0A0B4J1V6 119 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 A0A1W2PPQ1 181 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 MAP1LC3B2A6NCE7 125 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 PGPEP1LA6NFU8 196 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 PEX7O00628 323 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 PFN1P07737 140 aaKnown RBP7.28□□□□□ -1.24
COL6A3-214ENST00000493608 SRIP30626 198 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 PCNPQ8WW12 178 aaKnown RBP7.28□□□□□ -1.24
COL6A3-214ENST00000493608 MAP1LC3BQ9GZQ8 125 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 ARL2-SNX15V9GYD0 113 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 HERC2O95714 4834 aa7.28□□□□□ -1.24
COL6A3-214ENST00000493608 DYNC1H1Q14204 4646 aaKnown RBP7.27□□□□□ -1.25
COL6A3-214ENST00000493608 IGKV3D-20A0A0C4DH25 116 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 A0A1B0GV50 99 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 C16orf90A8MZG2 172 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 RNASE3P12724 160 aaKnown RBP7.27□□□□□ -1.25
COL6A3-214ENST00000493608 LINC00315P59091 139 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 SAPCD1Q5SSQ6 148 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 CFAP126Q5VTH2 177 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 SPATA12Q7Z6I5 190 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 WFDC10BQ8IUB3 73 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 KCNRGQ8N5I3 272 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 C9orf85Q96MD7 179 aa7.27□□□□□ -1.25
COL6A3-214ENST00000493608 FBLL1A6NHQ2 334 aaKnown RBP7.26□□□□□ -1.25
COL6A3-214ENST00000493608 FABP5P3A8MUU1 101 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 RS1O15537 224 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 ORM1P02763 201 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 GATA1P15976 413 aaPredicted RBP7.26□□□□□ -1.25
COL6A3-214ENST00000493608 CRIP1P50238 77 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 PPT1P50897 306 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 ZNF506Q5JVG8 444 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 CST9LP1Q5W188 147 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 NHLRC2Q8NBF2 726 aa7.26□□□□□ -1.25
COL6A3-214ENST00000493608 ZNF471Q9BX82 626 aaPredicted RBP7.26□□□□□ -1.25
COL6A3-214ENST00000493608 PAGE4O60829 102 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 S100A4P26447 101 aaKnown RBP7.25□□□□□ -1.25
COL6A3-214ENST00000493608 Q86TA4 180 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 SLC25A29Q8N8R3 303 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 STOML3Q8TAV4 291 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 FAM213BQ8TBF2 198 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 SFT2D1Q8WV19 159 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 HIST1H2BAQ96A08 127 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 ZC2HC1AQ96GY0 325 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 TXNDC17Q9BRA2 123 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 NKX6-2Q9C056 277 aaPredicted RBP7.25□□□□□ -1.25
COL6A3-214ENST00000493608 JPT2Q9H910 190 aa7.25□□□□□ -1.25
COL6A3-214ENST00000493608 A0A0D9SG52 128 aa7.24□□□□□ -1.25
COL6A3-214ENST00000493608 GRIFINA4D1Z8 144 aa7.24□□□□□ -1.25
COL6A3-214ENST00000493608 HMSDA8MTL9 139 aa7.24□□□□□ -1.25
COL6A3-214ENST00000493608 B4DEV8 164 aa7.24□□□□□ -1.25
COL6A3-214ENST00000493608 M0R036 132 aa7.24□□□□□ -1.25
COL6A3-214ENST00000493608 FUSP35637 526 aaKnown RBP eCLIP7.24□□□□□ -1.25
COL6A3-214ENST00000493608 ZNF345Q14585 488 aa7.24□□□□□ -1.25
COL6A3-214ENST00000493608 LY96Q9Y6Y9 160 aa7.24□□□□□ -1.25
COL6A3-214ENST00000493608 TMSB15BA0A087X1C1 80 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 KANTRA0A1W2PQU2 76 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 H3BVH4 76 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 BCL2L11O43521 198 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 SH2D1AO60880 128 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 SEC11BP0C7V7 166 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 ASIPP42127 132 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 UBE2G1P62253 170 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 LGALSLQ3ZCW2 172 aaPredicted RBP7.23□□□□□ -1.25
COL6A3-214ENST00000493608 Q6ZRN7 208 aaPredicted RBP7.23□□□□□ -1.25
COL6A3-214ENST00000493608 Q6ZSN1 163 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 MBD3L1Q8WWY6 194 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 FMC1Q96HJ9 113 aa7.23□□□□□ -1.25
COL6A3-214ENST00000493608 TRAV9-2A0A087WT02 112 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 KRBOX1C9JBD0 128 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 TMUB2Q71RG4 321 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 PTH2Q96A98 100 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 PRADC1Q9BSG0 188 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 SAMD10Q9BYL1 202 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 PARLQ9H300 379 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 ZFP30Q9Y2G7 519 aa7.22□□□□□ -1.25
COL6A3-214ENST00000493608 TRBV6-4A0A1B0GX49 114 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 UMAD1C9J7I0 102 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 PFDN1O60925 122 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 CRYGDP07320 174 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 ARMS2P0C7Q2 107 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 DNAH10OSP0CZ25 163 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 BTF3P20290 206 aaKnown RBP7.21□□□□□ -1.26
COL6A3-214ENST00000493608 EVI2AP22794 236 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 AKR1C3P42330 323 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 RHOHQ15669 191 aa7.21□□□□□ -1.26
COL6A3-214ENST00000493608 FAM162BQ5T6X4 162 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms