RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ASIPP42127 132 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 LIM2P55344 173 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 DLX1P56177 255 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 SMIM11AP58511 58 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 PMAIP1Q13794 54 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 DEFB121Q5J5C9 76 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 FAM120AOSQ5T036 256 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM14EPQ6UXP3 125 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 PRSS41Q7RTY9 318 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 DCAF4L2Q8NA75 395 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 C15orf53Q8NAA6 179 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 OR11H6Q8NGC7 330 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 OR51H1Q8NH63 302 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 BRK1Q8WUW1 75 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 OR2A5Q96R48 311 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 DSCR8Q96T75 97 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM70Q9BUB7 260 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM147Q9BVK8 224 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 TTTY10Q9BZA0 68 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM191AQ9H0A3 160 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 SLC39A9Q9NUM3 307 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 PCTPQ9UKL6 214 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 HHLA3Q9XRX5 114 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 V9GY05 133 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 NUMA1Q14980 2115 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 SACSQ9NZJ4 4579 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 USF3Q68DE3 2245 aa1.43□□□□□ -2.18
HMGB1-208ENST00000490788 DNAH1Q9P2D7 4330 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 COL7A1Q02388 2944 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 IGLV3-16A0A075B6K0 115 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TMSB15BA0A087X1C1 80 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV8-1A0A0A6YYK1 113 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 IGHV7-81A0A0B4J1V7 117 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV8-2A0A0B4J237 113 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV13-1A0A0B4J241 112 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV26-2A0A0B4J265 109 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 C3orf85A0A1B0GTC6 90 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 MDFIC2A0A1B0GVS7 189 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 hADV29S1A0JD25 119 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 C5orf63A6NC05 138 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 LY6LH3BQJ8 138 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 UQCRQO14949 82 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 SPINK4O60575 86 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 LYZL6O75951 148 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 WISP3O95389 354 aaPredicted RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 IGF1P05019 195 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 LGALS1P09382 135 aaKnown RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 MGST1P10620 155 aaKnown RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 IGFBP3P17936 291 aaPredicted RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 ATP5G3P48201 142 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 PSMB2P49721 201 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 DSCR4P56555 118 aaPredicted RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM258P61165 79 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 RPS11P62280 158 aaKnown RBP eCLIP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 PLGLB1Q02325 96 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF117Q03924 483 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TFF3Q07654 80 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 CDK5R1Q15078 307 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 CST6Q15828 149 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 RRN3P1Q2M238 152 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 MRPL2Q5T653 305 aaKnown RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 CFAP126Q5VTH2 177 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 ZNF493Q6ZR52 646 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 RFLNAQ6ZTI6 216 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 LINC00173Q6ZV60 143 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 ANKRD37Q7Z713 158 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 MRPL55Q7Z7F7 128 aaKnown RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TRAPPC6BQ86SZ2 158 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 LINC00596Q86U02 117 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TEN1Q86WV5 123 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 PCP2Q8IVA1 136 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 AMN1Q8IY45 258 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 CLECL1Q8IZS7 167 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 LINC00311Q8N616 119 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 ANKRD29Q8N6D5 301 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 MUC7Q8TAX7 377 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 FAM57AQ8TBR7 257 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 TMEM230Q96A57 120 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 PLEKHB2Q96CS7 222 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 BORCS8Q96FH0 119 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 ODF3Q96PU9 254 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 PDCD1LG2Q9BQ51 273 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 GNB1LQ9BYB4 327 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 HES7Q9BYE0 225 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 AGPAT4-IT1Q9H0P7 198 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 OTORQ9NRC9 128 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 NHP2Q9NX24 153 aaKnown RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 IL36BQ9NZH7 164 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 KLK12Q9UKR0 248 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 CHCHD2Q9Y6H1 151 aaPredicted RBP1.42□□□□□ -2.18
HMGB1-208ENST00000490788 CACNA1CQ13936 2221 aa1.42□□□□□ -2.18
HMGB1-208ENST00000490788 MYO18AQ92614 2054 aaKnown RBP1.41□□□□□ -2.18
HMGB1-208ENST00000490788 STAB2Q8WWQ8 2551 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV9-1A0A075B6T8 112 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV27A0A087WT01 109 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 TRAV8-4A0A0B4J246 113 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 SPTY2D1-AS1A0A0U1RR47 76 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 TEX50A0A1B0GTY4 177 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 C5orf49A4QMS7 147 aa1.41□□□□□ -2.18
HMGB1-208ENST00000490788 CPSF4LA6NMK7 179 aaKnown RBP1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms