RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	S100A4	P26447	101 aa	Known RBP	6.24	□□□□□ -1.41
USP4-213	ENST00000488520	TCTA	P57738	103 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	SOHLH1	Q5JUK2	328 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	MUC21	Q5SSG8	566 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520		Q6AWC8	147 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	PRR27	Q6MZM9	219 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	ZNF705A	Q6ZN79	300 aa	Predicted RBP	6.24	□□□□□ -1.41
USP4-213	ENST00000488520		Q86TA4	180 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	TVP23C	Q96ET8	276 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	SMIM12	Q96EX1	92 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	C16orf74	Q96GX8	76 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	SMIM7	Q9BQ49	75 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	SDF2L1	Q9HCN8	221 aa		6.24	□□□□□ -1.41
USP4-213	ENST00000488520	IGHV4-4	A0A075B6R2	117 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	IGHV4-28	A0A0C4DH34	117 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	TEX48	A0A1B0GUV7	120 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	XKRY2	A2RUG3	117 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	SRP19	P09132	144 aa	Known RBP	6.23	□□□□□ -1.41
USP4-213	ENST00000488520	SPART-AS1	P0CW21	52 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	OR5I1	Q13606	314 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	TMEM241	Q24JQ0	296 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	CENPW	Q5EE01	88 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	NHLRC2	Q8NBF2	726 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	DERL1	Q9BUN8	251 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	PARL	Q9H300	379 aa		6.23	□□□□□ -1.41
USP4-213	ENST00000488520	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	6.23	□□□□□ -1.41
USP4-213	ENST00000488520		B4DEV8	164 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	RTL8C	O15255	209 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	RBMY1A1	P0DJD3	496 aa	Known RBP	6.22	□□□□□ -1.41
USP4-213	ENST00000488520	RBMY1C	P0DJD4	496 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	ZNF415	Q09FC8	603 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	RBMY1F	Q15415	496 aa	Known RBP	6.22	□□□□□ -1.41
USP4-213	ENST00000488520	ANXA2R	Q3ZCQ2	193 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	UQCC3	Q6UW78	93 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520		Q6ZTC4	211 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	TMEM263	Q8WUH6	116 aa	Known RBP	6.22	□□□□□ -1.41
USP4-213	ENST00000488520	ZC2HC1A	Q96GY0	325 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	LINC00467	Q9BRT7	94 aa		6.22	□□□□□ -1.41
USP4-213	ENST00000488520	TRAV10	A0A0B4J240	114 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520		C9JCJ5	164 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	GNRH2	O43555	120 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	SH2D1A	O60880	128 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520		P01737	135 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	AZU1	P20160	251 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	ZNF80	P51504	273 aa	Predicted RBP	6.21	□□□□□ -1.42
USP4-213	ENST00000488520	RPS20	P60866	119 aa	Known RBP	6.21	□□□□□ -1.42
USP4-213	ENST00000488520	PRR9	Q5T870	116 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	COX8C	Q7Z4L0	72 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520		Q8NAQ8	132 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	OCC1	Q8TAD7	63 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	SPX	Q9BT56	116 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	MLST8	Q9BVC4	326 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	NAT8	Q9UHE5	227 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	LY96	Q9Y6Y9	160 aa		6.21	□□□□□ -1.42
USP4-213	ENST00000488520	TMSB15B	A0A087X1C1	80 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	LYRM9	A8MSI8	78 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520		M0R036	132 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	PRM2	P04554	102 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	ASIP	P42127	132 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	ERVFC1-1	P60608	527 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	DAD1	P61803	113 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	IBA57	Q5T440	356 aa	Known RBP	6.2	□□□□□ -1.42
USP4-213	ENST00000488520	COMMD7	Q86VX2	200 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	ZNF575	Q86XF7	245 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	C15orf54	Q8N8G6	183 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	NOP10	Q9NPE3	64 aa	Known RBP	6.2	□□□□□ -1.42
USP4-213	ENST00000488520	GSN-AS1	Q9NRJ2	163 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	DNAH11	Q96DT5	4516 aa		6.2	□□□□□ -1.42
USP4-213	ENST00000488520	IGLV2-18	A0A075B6J9	118 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	TRGV2	A0A075B6R0	118 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	DEFB131B	A0A096LNP1	70 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	LINC00862	A6NCI5	91 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	PGPEP1L	A6NFU8	196 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520		F8W036	122 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	GATC	O43716	136 aa	Known RBP	6.19	□□□□□ -1.42
USP4-213	ENST00000488520	SFTA3	P0C7M3	94 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	DEFB130B	P0DP73	79 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	DEFB130A	P0DP74	79 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	CRIP1	P50238	77 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	TDRG1	Q3Y452	100 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520		Q6ZQT7	251 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	POM121L12	Q8N7R1	296 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	OR2D3	Q8NGH3	330 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	TP53TG3	Q9ULZ0	132 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	CELA1	Q9UNI1	258 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	HSPG2	P98160	4391 aa		6.19	□□□□□ -1.42
USP4-213	ENST00000488520	TRGV1	A0A0A0MS02	117 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	GRIFIN	A4D1Z8	144 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	KRBOX1	C9JBD0	128 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	IGLV2-8	P01709	118 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	TYMS	P04818	313 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520		P0DMU3	169 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	FAM231A	P0DMU4	169 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	FAM231C	P0DMU5	169 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	DAZ2	Q13117	558 aa	Known RBP	6.18	□□□□□ -1.42
USP4-213	ENST00000488520	FHL2	Q14192	279 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	ADIRF	Q15847	76 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	FAM222A	Q5U5X8	452 aa		6.18	□□□□□ -1.42
USP4-213	ENST00000488520	RNASE8	Q8TDE3	154 aa	Known RBP	6.18	□□□□□ -1.42
USP4-213	ENST00000488520	MDFIC	Q9P1T7	246 aa		6.18	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms