RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 ZNF506Q5JVG8 444 aa10.34□□□□□ -0.75
TRIM54-204ENST00000488321 COX8CQ7Z4L0 72 aa10.34□□□□□ -0.75
TRIM54-204ENST00000488321 UPK3BQ9BT76 320 aa10.34□□□□□ -0.75
TRIM54-204ENST00000488321 TMSB15BA0A087X1C1 80 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 IGHV3-73A0A0B4J1V6 119 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 TRAV1-1A0A0B4J248 108 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 GRIFINA4D1Z8 144 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 KRBOX1C9JBD0 128 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 H3BVH4 76 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 K7EQD1 137 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 CFAP126Q5VTH2 177 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 NEGR1Q7Z3B1 354 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 BAGE2Q86Y30 109 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 C9orf62Q8N4C0 152 aa10.33□□□□□ -0.76
TRIM54-204ENST00000488321 RS1O15537 224 aa10.32□□□□□ -0.76
TRIM54-204ENST00000488321 ZNF674Q2M3X9 581 aa10.32□□□□□ -0.76
TRIM54-204ENST00000488321 TTC32Q5I0X7 151 aa10.32□□□□□ -0.76
TRIM54-204ENST00000488321 LOC100131303A0A0U1RQF7 123 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 NXPH4O95158 308 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 ARMS2P0C7Q2 107 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 GATA1P15976 413 aaPredicted RBP10.31□□□□□ -0.76
TRIM54-204ENST00000488321 LYPD5Q6UWN5 251 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 C6orf223Q8N319 242 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 PTH2Q96A98 100 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 TXNDC17Q9BRA2 123 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 IL36BQ9NZH7 164 aa10.31□□□□□ -0.76
TRIM54-204ENST00000488321 SIVA1O15304 175 aa10.3□□□□□ -0.76
TRIM54-204ENST00000488321 CIDEAO60543 219 aa10.3□□□□□ -0.76
TRIM54-204ENST00000488321 IFNA1P01562 189 aa10.3□□□□□ -0.76
TRIM54-204ENST00000488321 RPL35P42766 123 aaKnown RBP10.3□□□□□ -0.76
TRIM54-204ENST00000488321 LINC01559Q495D7 138 aa10.3□□□□□ -0.76
TRIM54-204ENST00000488321 PRR27Q6MZM9 219 aa10.3□□□□□ -0.76
TRIM54-204ENST00000488321 SLC25A29Q8N8R3 303 aa10.3□□□□□ -0.76
TRIM54-204ENST00000488321 SYT8Q8NBV8 401 aa10.3□□□□□ -0.76
TRIM54-204ENST00000488321 FAT2Q9NYQ8 4349 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 A0A1B0GVG6 124 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 A8MWV9 139 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 RHOHQ15669 191 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 PRADC1Q9BSG0 188 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 DERL1Q9BUN8 251 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 PHLDA3Q9Y5J5 127 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 HECTD4Q9Y4D8 3996 aa10.29□□□□□ -0.76
TRIM54-204ENST00000488321 TRBV6-4A0A1B0GX49 114 aa10.28□□□□□ -0.76
TRIM54-204ENST00000488321 DNLZQ5SXM8 178 aa10.28□□□□□ -0.76
TRIM54-204ENST00000488321 DMRTA1Q5VZB9 504 aa10.28□□□□□ -0.76
TRIM54-204ENST00000488321 C11orf52Q96A22 123 aa10.28□□□□□ -0.76
TRIM54-204ENST00000488321 KRTAP1-5Q9BYS1 174 aa10.28□□□□□ -0.76
TRIM54-204ENST00000488321 A0A1B0GVY2 172 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 A0A1W2PPQ1 181 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 M0R381 172 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 MGST1P10620 155 aaKnown RBP10.27□□□□□ -0.77
TRIM54-204ENST00000488321 RPL19P84098 196 aaKnown RBP10.27□□□□□ -0.77
TRIM54-204ENST00000488321 MEF2BQ02080 365 aaPredicted RBP10.27□□□□□ -0.77
TRIM54-204ENST00000488321 ALKAL2Q6UX46 152 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 SH2D6Q7Z4S9 175 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 MLST8Q9BVC4 326 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 PARLQ9H300 379 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 JPT2Q9H910 190 aa10.27□□□□□ -0.77
TRIM54-204ENST00000488321 MUC4Q99102 2169 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 NACAE9PAV3 2078 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 PDE6DO43924 150 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 BCL2P10415 239 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 NKX2-5P52952 324 aaPredicted RBP10.26□□□□□ -0.77
TRIM54-204ENST00000488321 CENPWQ5EE01 88 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 PIK3CD-AS1Q5SR53 167 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 FAM74A4Q5TZK3 123 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 ZFP2Q6ZN57 461 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 MED9Q9NWA0 146 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 DNAH17Q9UFH2 4485 aa10.26□□□□□ -0.77
TRIM54-204ENST00000488321 RAB19A4D1S5 217 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 TNP2Q05952 138 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 Q6ZSN1 163 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 WFDC10BQ8IUB3 73 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 ZFP82Q8N141 532 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 SAMD10Q9BYL1 202 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 SCRT2Q9NQ03 307 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 VAX2Q9UIW0 290 aa10.25□□□□□ -0.77
TRIM54-204ENST00000488321 A0A087WWL8 130 aa10.24□□□□□ -0.77
TRIM54-204ENST00000488321 GNG4P50150 75 aa10.24□□□□□ -0.77
TRIM54-204ENST00000488321 ZNF575Q86XF7 245 aa10.24□□□□□ -0.77
TRIM54-204ENST00000488321 LY96Q9Y6Y9 160 aa10.24□□□□□ -0.77
TRIM54-204ENST00000488321 TRAV9-2A0A087WT02 112 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 GAGE12JA6NER3 117 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 RHODO00212 210 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 TAGLN2P37802 199 aaKnown RBP10.23□□□□□ -0.77
TRIM54-204ENST00000488321 LINC00315P59091 139 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 BLOC1S1P78537 153 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 GAGE1Q13065 139 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 GAGE4Q13068 117 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 GAGE5Q13069 117 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 GAGE13Q4V321 117 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 DAZAP1Q96EP5 407 aaKnown RBP10.23□□□□□ -0.77
TRIM54-204ENST00000488321 SFRP2Q96HF1 295 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 BOLA1Q9Y3E2 137 aa10.23□□□□□ -0.77
TRIM54-204ENST00000488321 CXCL1P09341 107 aa10.22□□□□□ -0.77
TRIM54-204ENST00000488321 MED14OSP0DP75 135 aa10.22□□□□□ -0.77
TRIM54-204ENST00000488321 EVI2AP22794 236 aa10.22□□□□□ -0.77
TRIM54-204ENST00000488321 OR10AG1Q8NH19 301 aa10.22□□□□□ -0.77
TRIM54-204ENST00000488321 ATP6V0E2Q8NHE4 81 aa10.22□□□□□ -0.77
TRIM54-204ENST00000488321 MUC21A0A0G2JKD1 596 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms