RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 EMP1P54849 157 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 RBM11P57052 281 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 H2BFSP57053 126 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 LSM3P62310 102 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 HIST1H4AP62805 103 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 HLA-DRB3P79483 266 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 MYL5Q02045 173 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 PLGLB1Q02325 96 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 WFDC2Q14508 124 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 MRPL51Q4U2R6 128 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 SPATA45Q537H7 98 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 FKBP1CQ5VVH2 108 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 TNFAIP8L2Q6P589 184 aaPredicted RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 SBSNQ6UWP8 590 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 LCN15Q6UWW0 184 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 AMTNQ6UX39 209 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 Q6ZS92 163 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 DEFB107AQ8IZN7 70 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 C10orf111Q8N326 155 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 RPP25LQ8N5L8 163 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 WFDC11Q8NEX6 87 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 NUP35Q8NFH5 326 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 OR4B1Q8NGF8 309 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 OR5D14Q8NGL3 314 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 OR2T35Q8NGX2 323 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 ATP6V0E2Q8NHE4 81 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 STAG3L4Q8TBR4 150 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 RPS4Y2Q8TD47 263 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 RNASE6Q93091 150 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 POP5Q969H6 163 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 LINC00526Q96FQ7 95 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 GPX7Q96SL4 187 aaPredicted RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 IMMP2LQ96T52 175 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 VAMP8Q9BV40 100 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 SNRNP25Q9BV90 132 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 DPY30Q9C005 99 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 MED28Q9H204 178 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 SMDT1Q9H4I9 107 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 NDUFB11Q9NX14 153 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 BET1LQ9NYM9 111 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 LSM5Q9Y4Y9 91 aaKnown RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 CHCHD2Q9Y6H1 151 aaPredicted RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 COL1A1P02452 1464 aaPredicted RBP0.65□□□□□ -2.31
SMC4-220ENST00000488017 MRC1P22897 1456 aa0.65□□□□□ -2.31
SMC4-220ENST00000488017 DOCK10Q96BY6 2186 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 ZGRF1Q86YA3 2104 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 ALMS1Q8TCU4 4167 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TRAV27A0A087WT01 109 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TRAV5A0A0B4J249 113 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TRAV41A0A0B4J266 112 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TRBV7-6A0A0J9YX20 115 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TRBV7-7A0A0K0K1E9 115 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 A0A1B0GV50 99 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 A8MUN3 132 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 F2Z2F3 143 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SYS1-DBNDD2H3BUS1 97 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 GABARAPH6UMI1 98 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 M0R378 163 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SDCBPO00560 298 aaPredicted RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 UQCRQO14949 82 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 GSTZ1O43708 216 aaPredicted RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 CREBL2O60519 120 aaPredicted RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 ZNF737O75373 536 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SNAPC5O75971 98 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 PROSCO94903 275 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 NAPSAO96009 420 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 CYB5AP00167 134 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 HLA-DRB1P01911 266 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 APOA2P02652 100 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 IGHV3-30-3P0DP02 117 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 BCL2P10415 239 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 IFITM1P13164 125 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SLC25A16P16260 332 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 RPS4Y1P22090 263 aaKnown RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 CRYGSP22914 178 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 CBLN1P23435 193 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 HLA-DMBP28068 263 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 OPRM1P35372 400 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SNCAP37840 140 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 POLR2JP52435 117 aaKnown RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 DSCR4P56555 118 aaPredicted RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 LINC00313P59037 77 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TPPP2P59282 170 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TMEM258P61165 79 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 EIF5AP63241 154 aaKnown RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 QRFPP83859 136 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 ZNF345Q14585 488 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 HMGN3Q15651 99 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TPRXLQ17RH7 258 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 RRN3P1Q2M238 152 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 CENPWQ5EE01 88 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 NMSQ5H8A3 153 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SPANXN3Q5MJ09 141 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 EIF5AL1Q6IS14 154 aaKnown RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 LCN8Q6JVE9 175 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 MRPL54Q6P161 138 aaKnown RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 C22orf39Q6P5X5 142 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 LYPD5Q6UWN5 251 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 GTF2H5Q6ZYL4 71 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 AAED1Q7RTV5 226 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms