RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 CTSGP08311 255 aa11.82□□□□□ -0.52
HLA-DQB1-209ENST00000487676 C3orf56Q8N813 242 aa11.82□□□□□ -0.52
HLA-DQB1-209ENST00000487676 DKK4Q9UBT3 224 aa11.82□□□□□ -0.52
HLA-DQB1-209ENST00000487676 EXPH5Q8NEV8 1989 aa11.82□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RHODO00212 210 aa11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 THBDP07204 575 aa11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 LY6EQ16553 131 aa11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 TTC28Q96AY4 2481 aa11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 I3L3M4 83 aa11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RPL32P62910 135 aaKnown RBP11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 MRPL23Q16540 153 aaKnown RBP11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 ICOSQ9Y6W8 199 aa11.81□□□□□ -0.52
HLA-DQB1-209ENST00000487676 CCL21O00585 134 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 SPRY2O43597 315 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 A0A0J9YY99 117 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 E7EQL1 145 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 BUB3O43684 328 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 IGLV1-47P01700 117 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 IGFBPL1Q8WX77 278 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 TIMM17AQ99595 171 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 OVOL2Q9BRP0 275 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 LINC00527Q9UJ94 153 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 ADARB2-AS1A8MUL3 147 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 J3KT08 172 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 WISP2O76076 250 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RHOHQ15669 191 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 SLC25A29Q8N8R3 303 aa11.8□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RASL10AQ92737 203 aa11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RBMY1BA6NDE4 496 aaKnown RBP11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RBMY1EA6NEQ0 496 aaKnown RBP11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 ATP6V0E1O15342 81 aa11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 CRPP02741 224 aa11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RNASE1P07998 156 aaKnown RBP11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RBMY1DP0C7P1 496 aaKnown RBP11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RBMY1A1P0DJD3 496 aaKnown RBP11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 RBMY1CP0DJD4 496 aa11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 DUX3Q96PT4 197 aa11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 HIST1H4AP62805 103 aaKnown RBP11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 A0A0G2JNJ9 132 aa11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 PHLDA1Q8WV24 401 aaPredicted RBP11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 Q9UFV3 132 aa11.79□□□□□ -0.52
HLA-DQB1-209ENST00000487676 A0A0B4J2C4 111 aa11.78□□□□□ -0.52
HLA-DQB1-209ENST00000487676 CCDC179H3BU77 68 aa11.78□□□□□ -0.52
HLA-DQB1-209ENST00000487676 GNRH2O43555 120 aa11.78□□□□□ -0.52
HLA-DQB1-209ENST00000487676 TOMM7Q9P0U1 55 aa11.78□□□□□ -0.52
HLA-DQB1-209ENST00000487676 TRAV4A0A0B4J268 109 aa11.78□□□□□ -0.52
HLA-DQB1-209ENST00000487676 TEX49A0A1B0GTD5 131 aa11.77□□□□□ -0.52
HLA-DQB1-209ENST00000487676 FSTL3O95633 263 aa11.77□□□□□ -0.52
HLA-DQB1-209ENST00000487676 IGHV3OR16-10A0A075B7F0 116 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 FAM223BA6NKX1 122 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 HOXB4P17483 251 aaPredicted RBP11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 RPL39P62891 51 aaKnown RBP11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 S100A7L2Q5SY68 101 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 C9orf47Q6ZRZ4 202 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 FAM223AQ8IWN6 122 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 NPBQ8NG41 125 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 RHPN1-AS1Q9BWJ2 59 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 FAM215AQ9Y5M1 114 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 COL6A6A6NMZ7 2263 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 AGRNO00468 2067 aa11.77□□□□□ -0.53
HLA-DQB1-209ENST00000487676 PRIMA1Q86XR5 153 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 DUX5Q96PT3 197 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 MOB4Q9Y3A3 225 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 GAS8-AS1O95177 125 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 FANCD2OSQ96PS1 177 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 CDIP1Q9H305 208 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 COL4A2P08572 1712 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 NOTCH3Q9UM47 2321 aa11.76□□□□□ -0.53
HLA-DQB1-209ENST00000487676 A0A0J9YXV3 536 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 G3V318 75 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 CNFNQ9BYD5 112 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 TET2Q6N021 2002 aaPredicted RBP11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 IGHV3-73A0A0B4J1V6 119 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 Q6Q795 121 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 CHCHD5Q9BSY4 110 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 IGHV3-33P01772 117 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 CRYGBP07316 175 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 P0DMU3 169 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 FAM231AP0DMU4 169 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 FAM231CP0DMU5 169 aa11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 ZNF625Q96I27 306 aaPredicted RBP11.75□□□□□ -0.53
HLA-DQB1-209ENST00000487676 DYNLRB2Q8TF09 96 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 SPRY4Q9C004 299 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 IGKV3OR2-268A0A0C4DH90 116 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 Q71RC1 249 aaPredicted RBP11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 NFE4Q86UQ8 179 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 NRACQ8N912 160 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 CENPFP49454 3210 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 UBE2D1P51668 147 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 SUMO4Q6EEV6 95 aa11.74□□□□□ -0.53
HLA-DQB1-209ENST00000487676 NOTCH2Q04721 2471 aa11.73□□□□□ -0.53
HLA-DQB1-209ENST00000487676 ATOX1O00244 68 aa11.73□□□□□ -0.53
HLA-DQB1-209ENST00000487676 MED14OSP0DP75 135 aa11.73□□□□□ -0.53
HLA-DQB1-209ENST00000487676 USMG5Q96IX5 58 aa11.73□□□□□ -0.53
HLA-DQB1-209ENST00000487676 ATP5G1P05496 136 aa11.73□□□□□ -0.53
HLA-DQB1-209ENST00000487676 BAALC-AS2P0C853 105 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 A0A0C4DFX4 3053 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 UBE2D3P61077 147 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 UBE2D2P62837 147 aa11.72□□□□□ -0.53
HLA-DQB1-209ENST00000487676 RUSC1-AS1Q66K80 236 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms