RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 IGHG4P01861 327 aa12.81□□□□□ -0.36
COL7A1-210ENST00000487017 RPL39LQ96EH5 51 aaKnown RBP12.81□□□□□ -0.36
COL7A1-210ENST00000487017 MSRB1Q9NZV6 116 aa12.81□□□□□ -0.36
COL7A1-210ENST00000487017 B5MCH6 92 aa12.81□□□□□ -0.36
COL7A1-210ENST00000487017 SPRY2O43597 315 aa12.81□□□□□ -0.36
COL7A1-210ENST00000487017 IGKV1OR2-108A0A075B7D4 117 aa12.8□□□□□ -0.36
COL7A1-210ENST00000487017 IGLL5B9A064 214 aa12.8□□□□□ -0.36
COL7A1-210ENST00000487017 XCL1P47992 114 aa12.8□□□□□ -0.36
COL7A1-210ENST00000487017 EML6Q6ZMW3 1958 aa12.8□□□□□ -0.36
COL7A1-210ENST00000487017 SHANK1Q9Y566 2161 aa12.8□□□□□ -0.36
COL7A1-210ENST00000487017 WI2-2373I1.2A0A1W2PRP0 233 aa12.8□□□□□ -0.36
COL7A1-210ENST00000487017 TRACP01848 142 aa12.8□□□□□ -0.36
COL7A1-210ENST00000487017 ODF3L1Q8IXM7 274 aa12.79□□□□□ -0.36
COL7A1-210ENST00000487017 IGKV2D-24A0A075B6R9 120 aa12.79□□□□□ -0.36
COL7A1-210ENST00000487017 UBE2BP63146 152 aa12.79□□□□□ -0.36
COL7A1-210ENST00000487017 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.79□□□□□ -0.36
COL7A1-210ENST00000487017 IGKV2-29A2NJV5 120 aaPredicted RBP12.79□□□□□ -0.36
COL7A1-210ENST00000487017 BUB3O43684 328 aa12.79□□□□□ -0.36
COL7A1-210ENST00000487017 Q6ZQT7 251 aa12.79□□□□□ -0.36
COL7A1-210ENST00000487017 IGHV4-4A0A075B6R2 117 aa12.78□□□□□ -0.36
COL7A1-210ENST00000487017 DEFB112Q30KQ8 113 aa12.78□□□□□ -0.36
COL7A1-210ENST00000487017 U3KQE9 123 aa12.78□□□□□ -0.36
COL7A1-210ENST00000487017 NOP10Q9NPE3 64 aaKnown RBP12.78□□□□□ -0.36
COL7A1-210ENST00000487017 TEX22C9J3V5 150 aa12.78□□□□□ -0.36
COL7A1-210ENST00000487017 IGHV4-59P01825 116 aa12.78□□□□□ -0.36
COL7A1-210ENST00000487017 VPREB3Q9UKI3 123 aa12.78□□□□□ -0.36
COL7A1-210ENST00000487017 CACNA1BQ00975 2339 aa12.78□□□□□ -0.36
COL7A1-210ENST00000487017 Q9HAA7 133 aa12.77□□□□□ -0.36
COL7A1-210ENST00000487017 C16orf54Q6UWD8 224 aa12.77□□□□□ -0.36
COL7A1-210ENST00000487017 RMI2Q96E14 147 aa12.77□□□□□ -0.36
COL7A1-210ENST00000487017 Q9H8V8 135 aa12.77□□□□□ -0.36
COL7A1-210ENST00000487017 KIF26AQ9ULI4 1882 aaPredicted RBP12.77□□□□□ -0.37
COL7A1-210ENST00000487017 MALRD1Q5VYJ5 2156 aa12.77□□□□□ -0.37
COL7A1-210ENST00000487017 PRSS47A8MTI9 375 aa12.77□□□□□ -0.37
COL7A1-210ENST00000487017 ANKRD29Q8N6D5 301 aa12.77□□□□□ -0.37
COL7A1-210ENST00000487017 ZFP2Q6ZN57 461 aa12.77□□□□□ -0.37
COL7A1-210ENST00000487017 C15orf53Q8NAA6 179 aa12.77□□□□□ -0.37
COL7A1-210ENST00000487017 GTF3C1Q12789 2109 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 FRMD6-AS1P0C7T7 363 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 IGF2-ASQ6U949 168 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 E7EUB6 86 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 CRYBA4P53673 196 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 Q8N9W7 124 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 TEX48A0A1B0GUV7 120 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 SLC25A29Q8N8R3 303 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 AJUBAQ96IF1 538 aa12.75□□□□□ -0.37
COL7A1-210ENST00000487017 TRBV6-1A0A0K0K1D8 114 aa12.74□□□□□ -0.37
COL7A1-210ENST00000487017 MRPL36Q9P0J6 103 aaKnown RBP12.74□□□□□ -0.37
COL7A1-210ENST00000487017 HIGD1BQ9P298 99 aa12.74□□□□□ -0.37
COL7A1-210ENST00000487017 HERV-K104P63124 156 aa12.74□□□□□ -0.37
COL7A1-210ENST00000487017 SH2D6Q7Z4S9 175 aa12.74□□□□□ -0.37
COL7A1-210ENST00000487017 RNASE8Q8TDE3 154 aaKnown RBP12.74□□□□□ -0.37
COL7A1-210ENST00000487017 PRAC2D3DTV9 90 aa12.74□□□□□ -0.37
COL7A1-210ENST00000487017 NCKAP5O14513 1909 aa12.74□□□□□ -0.37
COL7A1-210ENST00000487017 P0C879 139 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 IGLV1-47P01700 117 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 CTRLP40313 264 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 NBL1P41271 181 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 DEFB136Q30KP8 78 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 SMIM20Q8N5G0 67 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 PRB2P02812 416 aaPredicted RBP12.73□□□□□ -0.37
COL7A1-210ENST00000487017 C9orf47Q6ZRZ4 202 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 FXYD2P54710 66 aa12.73□□□□□ -0.37
COL7A1-210ENST00000487017 SPTAN1Q13813 2472 aaKnown RBP12.73□□□□□ -0.37
COL7A1-210ENST00000487017 TAX1BP3O14907 124 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 BAALC-AS2P0C853 105 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 SEM1Q6ZVN7 128 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 ZNF106Q9H2Y7 1883 aaKnown RBP12.72□□□□□ -0.37
COL7A1-210ENST00000487017 CLPSL1A2RUU4 121 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 IGHV4-38-2P0DP08 117 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 RNF152Q8N8N0 203 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 CACNA1HO95180 2353 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 IGHV4-61A0A0C4DH41 118 aa12.72□□□□□ -0.37
COL7A1-210ENST00000487017 C19orf71A6NCJ1 209 aa12.71□□□□□ -0.37
COL7A1-210ENST00000487017 C5orf56Q8N8D9 126 aa12.71□□□□□ -0.37
COL7A1-210ENST00000487017 RPL18AQ02543 176 aaKnown RBP12.71□□□□□ -0.37
COL7A1-210ENST00000487017 MUSTN1Q8IVN3 82 aa12.71□□□□□ -0.37
COL7A1-210ENST00000487017 SPRY4Q9C004 299 aa12.71□□□□□ -0.37
COL7A1-210ENST00000487017 IGHV4-28A0A0C4DH34 117 aa12.71□□□□□ -0.38
COL7A1-210ENST00000487017 A0A0J9YXV3 536 aa12.71□□□□□ -0.38
COL7A1-210ENST00000487017 NOTCH3Q9UM47 2321 aa12.71□□□□□ -0.38
COL7A1-210ENST00000487017 TOMM6Q96B49 74 aa12.71□□□□□ -0.38
COL7A1-210ENST00000487017 ZMAT4Q9H898 229 aa12.71□□□□□ -0.38
COL7A1-210ENST00000487017 APRG1Q8IVJ8 170 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 C5orf38Q86SI9 138 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 MED13Q9UHV7 2174 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 NBASA2RRP1 2371 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 ZNF503Q96F45 646 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 A4D1N5 150 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 BLCAPP62952 87 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 RBM3P98179 157 aaKnown RBP12.7□□□□□ -0.38
COL7A1-210ENST00000487017 C5orf47Q569G3 176 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 TTTY13Q9BZ97 58 aa12.7□□□□□ -0.38
COL7A1-210ENST00000487017 PCNX1Q96RV3 2341 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 BAALCQ8WXS3 180 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 SLURP1P55000 103 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 OBSL1O75147 1896 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 ACYP1P07311 99 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 MED14OSP0DP75 135 aa12.69□□□□□ -0.38
COL7A1-210ENST00000487017 MSMPQ1L6U9 139 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms