RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 CRYGDP07320 174 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 SCGB1D4Q6XE38 83 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 TMEM219Q86XT9 240 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 POM121L12Q8N7R1 296 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 LINC00527Q9UJ94 153 aa9.22□□□□□ -0.93
COL3A1-206ENST00000487010 A0A1W2PPR1 153 aa9.21□□□□□ -0.93
COL3A1-206ENST00000487010 LINC01549A6NIU2 74 aa9.21□□□□□ -0.93
COL3A1-206ENST00000487010 NDUFS8O00217 210 aa9.21□□□□□ -0.93
COL3A1-206ENST00000487010 RNASE3P12724 160 aaKnown RBP9.21□□□□□ -0.93
COL3A1-206ENST00000487010 UBE2D1P51668 147 aa9.21□□□□□ -0.93
COL3A1-206ENST00000487010 APRG1Q8IVJ8 170 aa9.21□□□□□ -0.93
COL3A1-206ENST00000487010 NDUFA4O00483 81 aa9.2□□□□□ -0.94
COL3A1-206ENST00000487010 TRBV12-3P01733 135 aa9.2□□□□□ -0.94
COL3A1-206ENST00000487010 CRIP2P52943 208 aaPredicted RBP9.2□□□□□ -0.94
COL3A1-206ENST00000487010 LMO4P61968 165 aa9.2□□□□□ -0.94
COL3A1-206ENST00000487010 SRSF9Q13242 221 aaKnown RBP eCLIP9.2□□□□□ -0.94
COL3A1-206ENST00000487010 DLX4Q92988 240 aaPredicted RBP9.2□□□□□ -0.94
COL3A1-206ENST00000487010 MOB4Q9Y3A3 225 aa9.2□□□□□ -0.94
COL3A1-206ENST00000487010 DUSP14O95147 198 aaKnown RBP9.2□□□□□ -0.94
COL3A1-206ENST00000487010 CFAP126Q5VTH2 177 aa9.2□□□□□ -0.94
COL3A1-206ENST00000487010 KLHL30-AS1Q8NEE0 82 aa9.2□□□□□ -0.94
COL3A1-206ENST00000487010 HRNRQ86YZ3 2850 aaPredicted RBP9.2□□□□□ -0.94
COL3A1-206ENST00000487010 IGLV4-69A0A075B6H9 119 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 IGHV1-69DA0A0B4J2H0 117 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 C11orf86A6NJI1 115 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 F6UB75 175 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 NXPH4O95158 308 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 APOMO95445 188 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 TSPAN13O95857 204 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 TSHBP01222 138 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 SMCPP49901 116 aaPredicted RBP9.19□□□□□ -0.94
COL3A1-206ENST00000487010 LINC00315P59091 139 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 RPL32P62910 135 aaKnown RBP9.19□□□□□ -0.94
COL3A1-206ENST00000487010 KLRB1Q12918 225 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 ATP6V0E2Q8NHE4 81 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 KIF25-AS1Q9Y6Z4 181 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 IGHV4OR15-8A0A075B7B6 117 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 A0A087WW49 117 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 FOXI1Q12951 378 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 PAPPA-AS1Q5QFB9 102 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 C1QTNF4Q9BXJ3 329 aa9.19□□□□□ -0.94
COL3A1-206ENST00000487010 TRBV7-9A0A0J9YWB2 115 aa9.18□□□□□ -0.94
COL3A1-206ENST00000487010 IGIPA6NJ69 53 aa9.18□□□□□ -0.94
COL3A1-206ENST00000487010 CD7P09564 240 aa9.18□□□□□ -0.94
COL3A1-206ENST00000487010 HERVK_113P61574 105 aa9.18□□□□□ -0.94
COL3A1-206ENST00000487010 TP53TG1Q9Y2A0 90 aa9.18□□□□□ -0.94
COL3A1-206ENST00000487010 MED13LQ71F56 2210 aa9.18□□□□□ -0.94
COL3A1-206ENST00000487010 TLN1Q9Y490 2541 aaKnown RBP9.18□□□□□ -0.94
COL3A1-206ENST00000487010 MUC4Q99102 2169 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 A0A0J9YY99 117 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 PSMB2P49721 201 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 UBE2D3P61077 147 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 UBE2D2P62837 147 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 RPL11P62913 178 aaKnown RBP9.17□□□□□ -0.94
COL3A1-206ENST00000487010 PMVKQ15126 192 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 ZFP2Q6ZN57 461 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 BPESC1Q9GZL8 116 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 CACNA1BQ00975 2339 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 LOC107984156A0A0G2JMH3 177 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 POLR2KP53803 58 aaKnown RBP9.17□□□□□ -0.94
COL3A1-206ENST00000487010 ARL17AQ8IVW1 177 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 UBTD1Q9HAC8 227 aa9.17□□□□□ -0.94
COL3A1-206ENST00000487010 A0A1B0GV72 72 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 EMP1P54849 157 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 NDUFA11Q86Y39 141 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 TMEM141Q96I45 108 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 RELNP78509 3460 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 IGHV3OR16-10A0A075B7F0 116 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 VCYO14598 125 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 SUMO4Q6EEV6 95 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 SFTA2Q6UW10 78 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 NFE4Q86UQ8 179 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 PTPRQQ9UMZ3 2332 aa9.16□□□□□ -0.94
COL3A1-206ENST00000487010 IGKV3-7A0A075B6H7 116 aa9.15□□□□□ -0.94
COL3A1-206ENST00000487010 RPL39P62891 51 aaKnown RBP9.15□□□□□ -0.94
COL3A1-206ENST00000487010 LYRM7Q5U5X0 104 aa9.15□□□□□ -0.94
COL3A1-206ENST00000487010 CLEC2AQ6UVW9 174 aa9.15□□□□□ -0.94
COL3A1-206ENST00000487010 USMG5Q96IX5 58 aa9.15□□□□□ -0.94
COL3A1-206ENST00000487010 TIMM17AQ99595 171 aa9.15□□□□□ -0.94
COL3A1-206ENST00000487010 JPT2Q9H910 190 aa9.15□□□□□ -0.94
COL3A1-206ENST00000487010 SPTBN2O15020 2390 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 KLLNB2CW77 178 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 BRI3O95415 125 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 IGHV3-11P01762 117 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 SYT8Q8NBV8 401 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 DEFB104AQ8WTQ1 72 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 KIR2DL4Q99706 377 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 RHPN1-AS1Q9BWJ2 59 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 CDIP1Q9H305 208 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 H3BUA1 57 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 IGHV3-30P01768 117 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 IGHV3-30-5P0DP03 117 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 TSPEAR-AS2P59090 65 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 FAM159AQ6UWV7 190 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 Q6ZS46 218 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 SLC25A29Q8N8R3 303 aa9.14□□□□□ -0.95
COL3A1-206ENST00000487010 ZNF418Q8TF45 676 aaPredicted RBP9.14□□□□□ -0.95
COL3A1-206ENST00000487010 IGHV1-69P01742 117 aa9.13□□□□□ -0.95
COL3A1-206ENST00000487010 CFC1BP0CG36 223 aa9.13□□□□□ -0.95
COL3A1-206ENST00000487010 CFC1P0CG37 223 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms