RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 LINC01556Q5JQF7 62 aa14.49□□□□□ -0.09
USP40-215ENST00000484528 INO80EQ8NBZ0 244 aaPredicted RBP14.49□□□□□ -0.09
USP40-215ENST00000484528 Q9HAA7 133 aa14.49□□□□□ -0.09
USP40-215ENST00000484528 TRAV8-6A0A0B4J262 113 aa14.48□□□□□ -0.09
USP40-215ENST00000484528 PSCAO43653 123 aa14.48□□□□□ -0.09
USP40-215ENST00000484528 IGHV3-30P01768 117 aa14.48□□□□□ -0.09
USP40-215ENST00000484528 IGHV3-33P01772 117 aa14.48□□□□□ -0.09
USP40-215ENST00000484528 IGHV3-30-3P0DP02 117 aa14.48□□□□□ -0.09
USP40-215ENST00000484528 IGHV3-30-5P0DP03 117 aa14.48□□□□□ -0.09
USP40-215ENST00000484528 UBE2G2P60604 165 aa14.48□□□□□ -0.09
USP40-215ENST00000484528 A0A1W2PRE2 83 aa14.47□□□□□ -0.09
USP40-215ENST00000484528 IFNA7P01567 189 aa14.47□□□□□ -0.09
USP40-215ENST00000484528 SAPCD1Q5SSQ6 148 aa14.47□□□□□ -0.09
USP40-215ENST00000484528 ARL2-SNX15V9GYD0 113 aa14.47□□□□□ -0.09
USP40-215ENST00000484528 BORCS7-ASMTA0A0B4J1R7 106 aa14.46□□□□□ -0.09
USP40-215ENST00000484528 IGKV3D-20A0A0C4DH25 116 aa14.46□□□□□ -0.09
USP40-215ENST00000484528 FGF8P55075 233 aaPredicted RBP14.46□□□□□ -0.09
USP40-215ENST00000484528 Q6ZSN1 163 aa14.46□□□□□ -0.09
USP40-215ENST00000484528 CTXND1A0A1B0GTU2 59 aa14.45□□□□□ -0.1
USP40-215ENST00000484528 IBA57-AS1B1ANH7 110 aa14.45□□□□□ -0.1
USP40-215ENST00000484528 CIDEAO60543 219 aa14.45□□□□□ -0.1
USP40-215ENST00000484528 GCSHP23434 173 aa14.45□□□□□ -0.1
USP40-215ENST00000484528 S100A4P26447 101 aaKnown RBP14.45□□□□□ -0.1
USP40-215ENST00000484528 ATP6V0E2Q8NHE4 81 aa14.45□□□□□ -0.1
USP40-215ENST00000484528 PEX7O00628 323 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 MGST1P10620 155 aaKnown RBP14.44□□□□□ -0.1
USP40-215ENST00000484528 HAMPP81172 84 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 LGALSLQ3ZCW2 172 aaPredicted RBP14.44□□□□□ -0.1
USP40-215ENST00000484528 LELP1Q5T871 98 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 Q86TA4 180 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 Q8N3U1 123 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 PTH2Q96A98 100 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 PARLQ9H300 379 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 FAT1Q14517 4588 aa14.44□□□□□ -0.1
USP40-215ENST00000484528 LRCOL1A6NCL2 159 aa14.43□□□□□ -0.1
USP40-215ENST00000484528 ASIPP42127 132 aa14.43□□□□□ -0.1
USP40-215ENST00000484528 OR2T35Q8NGX2 323 aa14.43□□□□□ -0.1
USP40-215ENST00000484528 GTSF1LQ9H1H1 148 aa14.43□□□□□ -0.1
USP40-215ENST00000484528 JPT2Q9H910 190 aa14.43□□□□□ -0.1
USP40-215ENST00000484528 IGLV5-52A0A0A0MRZ9 124 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 GAGE12JA6NER3 117 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 H3BVH4 76 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 GAGE1Q13065 139 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 GAGE4Q13068 117 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 GAGE5Q13069 117 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 GAGE13Q4V321 117 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 Q5VSD8 79 aa14.42□□□□□ -0.1
USP40-215ENST00000484528 DMBT1Q9UGM3 2413 aaPredicted RBP14.41□□□□□ -0.1
USP40-215ENST00000484528 FAM74A7A6NL05 159 aa14.41□□□□□ -0.1
USP40-215ENST00000484528 FABP5P3A8MUU1 101 aa14.41□□□□□ -0.1
USP40-215ENST00000484528 M0R036 132 aa14.41□□□□□ -0.1
USP40-215ENST00000484528 SMR3BP02814 79 aaPredicted RBP14.41□□□□□ -0.1
USP40-215ENST00000484528 AKR1C8PQ5T2L2 129 aa14.41□□□□□ -0.1
USP40-215ENST00000484528 Q9UF83 564 aa14.41□□□□□ -0.1
USP40-215ENST00000484528 A8MWV9 139 aa14.4□□□□□ -0.1
USP40-215ENST00000484528 B4DEV8 164 aa14.4□□□□□ -0.1
USP40-215ENST00000484528 G3V3Q6 166 aa14.4□□□□□ -0.1
USP40-215ENST00000484528 ZC2HC1AQ96GY0 325 aa14.4□□□□□ -0.1
USP40-215ENST00000484528 SAMD10Q9BYL1 202 aa14.4□□□□□ -0.1
USP40-215ENST00000484528 FLG2Q5D862 2391 aaPredicted RBP14.39□□□□□ -0.11
USP40-215ENST00000484528 INAFM2P0DMQ5 153 aa14.39□□□□□ -0.11
USP40-215ENST00000484528 ZFP2Q6ZN57 461 aa14.39□□□□□ -0.11
USP40-215ENST00000484528 FRZBQ92765 325 aa14.39□□□□□ -0.11
USP40-215ENST00000484528 GRIFINA4D1Z8 144 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 MAP1LC3B2A6NCE7 125 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 SH2D1AO60880 128 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 LINC00694P0DN24 101 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 CRIP1P50238 77 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 C14orf178Q8N769 122 aaPredicted RBP14.38□□□□□ -0.11
USP40-215ENST00000484528 Q8N814 137 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 HIST1H2BAQ96A08 127 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 MAP1LC3BQ9GZQ8 125 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 IL36BQ9NZH7 164 aa14.38□□□□□ -0.11
USP40-215ENST00000484528 ARPC5O15511 151 aa14.37□□□□□ -0.11
USP40-215ENST00000484528 DMRTA1Q5VZB9 504 aa14.37□□□□□ -0.11
USP40-215ENST00000484528 BOLA1Q9Y3E2 137 aa14.37□□□□□ -0.11
USP40-215ENST00000484528 KRBOX1C9JBD0 128 aa14.36□□□□□ -0.11
USP40-215ENST00000484528 ARMS2P0C7Q2 107 aa14.36□□□□□ -0.11
USP40-215ENST00000484528 FAM74A4Q5TZK3 123 aa14.36□□□□□ -0.11
USP40-215ENST00000484528 UFSP1Q6NVU6 142 aa14.36□□□□□ -0.11
USP40-215ENST00000484528 NTN5Q8WTR8 489 aaPredicted RBP14.36□□□□□ -0.11
USP40-215ENST00000484528 CYTL1Q9NRR1 136 aa14.36□□□□□ -0.11
USP40-215ENST00000484528 TMSB15BA0A087X1C1 80 aa14.35□□□□□ -0.11
USP40-215ENST00000484528 UBE2G1P62253 170 aa14.35□□□□□ -0.11
USP40-215ENST00000484528 WFDC2Q14508 124 aa14.35□□□□□ -0.11
USP40-215ENST00000484528 PIK3CD-AS1Q5SR53 167 aa14.35□□□□□ -0.11
USP40-215ENST00000484528 DAZ4Q86SG3 579 aaKnown RBP14.35□□□□□ -0.11
USP40-215ENST00000484528 NKX6-2Q9C056 277 aaPredicted RBP14.35□□□□□ -0.11
USP40-215ENST00000484528 DAZ3Q9NR90 486 aaKnown RBP14.35□□□□□ -0.11
USP40-215ENST00000484528 SMLR1H3BR10 107 aa14.34□□□□□ -0.11
USP40-215ENST00000484528 LAGE3Q14657 143 aa14.34□□□□□ -0.11
USP40-215ENST00000484528 SYT8Q8NBV8 401 aa14.34□□□□□ -0.11
USP40-215ENST00000484528 OR11H4Q8NGC9 324 aa14.34□□□□□ -0.11
USP40-215ENST00000484528 SRRM2Q9UQ35 2752 aaKnown RBP14.34□□□□□ -0.11
USP40-215ENST00000484528 A0A087WWL8 130 aa14.33□□□□□ -0.12
USP40-215ENST00000484528 LECT2O14960 151 aa14.33□□□□□ -0.12
USP40-215ENST00000484528 FHITP49789 147 aa14.33□□□□□ -0.12
USP40-215ENST00000484528 FAM162BQ5T6X4 162 aa14.33□□□□□ -0.12
USP40-215ENST00000484528 CST9LP1Q5W188 147 aa14.33□□□□□ -0.12
USP40-215ENST00000484528 FMC1Q96HJ9 113 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms