RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 A0A1W2PRE2 83 aa12.64□□□□□ -0.39
CCDC88B-206ENST00000473405 PGPEP1LA6NFU8 196 aa12.64□□□□□ -0.39
CCDC88B-206ENST00000473405 RHOHQ15669 191 aa12.64□□□□□ -0.39
CCDC88B-206ENST00000473405 LINC01556Q5JQF7 62 aa12.64□□□□□ -0.39
CCDC88B-206ENST00000473405 FXYD6-FXYD2A0A087WZ82 144 aa12.63□□□□□ -0.39
CCDC88B-206ENST00000473405 CIDEAO60543 219 aa12.63□□□□□ -0.39
CCDC88B-206ENST00000473405 XGP55808 180 aa12.63□□□□□ -0.39
CCDC88B-206ENST00000473405 KRTAP10-1P60331 282 aa12.63□□□□□ -0.39
CCDC88B-206ENST00000473405 INO80EQ8NBZ0 244 aaPredicted RBP12.63□□□□□ -0.39
CCDC88B-206ENST00000473405 TRAV34A0A0B4J273 112 aa12.62□□□□□ -0.39
CCDC88B-206ENST00000473405 IGKV3D-20A0A0C4DH25 116 aa12.62□□□□□ -0.39
CCDC88B-206ENST00000473405 SAPCD1Q5SSQ6 148 aa12.62□□□□□ -0.39
CCDC88B-206ENST00000473405 PRADC1Q9BSG0 188 aa12.62□□□□□ -0.39
CCDC88B-206ENST00000473405 ARL2-SNX15V9GYD0 113 aa12.62□□□□□ -0.39
CCDC88B-206ENST00000473405 DMBT1Q9UGM3 2413 aaPredicted RBP12.62□□□□□ -0.39
CCDC88B-206ENST00000473405 CTXND1A0A1B0GTU2 59 aa12.61□□□□□ -0.39
CCDC88B-206ENST00000473405 G3V3Q6 166 aa12.61□□□□□ -0.39
CCDC88B-206ENST00000473405 Q86TA4 180 aa12.61□□□□□ -0.39
CCDC88B-206ENST00000473405 hCG_2014768A0A024R1R8 64 aa12.6□□□□□ -0.39
CCDC88B-206ENST00000473405 BORCS7-ASMTA0A0B4J1R7 106 aa12.6□□□□□ -0.39
CCDC88B-206ENST00000473405 MGST1P10620 155 aaKnown RBP12.6□□□□□ -0.39
CCDC88B-206ENST00000473405 UBE2G2P60604 165 aa12.6□□□□□ -0.39
CCDC88B-206ENST00000473405 Q6ZSN1 163 aa12.6□□□□□ -0.39
CCDC88B-206ENST00000473405 OR2T35Q8NGX2 323 aa12.6□□□□□ -0.39
CCDC88B-206ENST00000473405 TRAV8-6A0A0B4J262 113 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 LRCOL1A6NCL2 159 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 IBA57-AS1B1ANH7 110 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 PEX7O00628 323 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 LINC00694P0DN24 101 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 FGF8P55075 233 aaPredicted RBP12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 OR10J3Q5JRS4 329 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 LELP1Q5T871 98 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 PARLQ9H300 379 aa12.59□□□□□ -0.39
CCDC88B-206ENST00000473405 FAM74A7A6NL05 159 aa12.58□□□□□ -0.4
CCDC88B-206ENST00000473405 IFNA7P01567 189 aa12.58□□□□□ -0.4
CCDC88B-206ENST00000473405 GTSF1LQ9H1H1 148 aa12.58□□□□□ -0.4
CCDC88B-206ENST00000473405 EPM2AB3EWF7 344 aa12.57□□□□□ -0.4
CCDC88B-206ENST00000473405 ASIPP42127 132 aa12.57□□□□□ -0.4
CCDC88B-206ENST00000473405 PIK3CD-AS1Q5SR53 167 aa12.57□□□□□ -0.4
CCDC88B-206ENST00000473405 UFSP1Q6NVU6 142 aa12.57□□□□□ -0.4
CCDC88B-206ENST00000473405 ZFP2Q6ZN57 461 aa12.57□□□□□ -0.4
CCDC88B-206ENST00000473405 ATP6V0E2Q8NHE4 81 aa12.57□□□□□ -0.4
CCDC88B-206ENST00000473405 ZC2HC1AQ96GY0 325 aa12.57□□□□□ -0.4
CCDC88B-206ENST00000473405 DNAH8Q96JB1 4490 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 FABP5P3A8MUU1 101 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 A8MWV9 139 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 PSCAO43653 123 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 IGHV3-30P01768 117 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 IGHV3-33P01772 117 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 IGHV3-30-3P0DP02 117 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 IGHV3-30-5P0DP03 117 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 GCSHP23434 173 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 S100A4P26447 101 aaKnown RBP12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 CRIP1P50238 77 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 Q8N3U1 123 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 JPT2Q9H910 190 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 Q9HAA7 133 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 IL36BQ9NZH7 164 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 Q9UF83 564 aa12.56□□□□□ -0.4
CCDC88B-206ENST00000473405 AKR1C8PQ5T2L2 129 aa12.55□□□□□ -0.4
CCDC88B-206ENST00000473405 COX8CQ7Z4L0 72 aa12.55□□□□□ -0.4
CCDC88B-206ENST00000473405 HIST1H2BAQ96A08 127 aa12.55□□□□□ -0.4
CCDC88B-206ENST00000473405 NKX6-2Q9C056 277 aaPredicted RBP12.55□□□□□ -0.4
CCDC88B-206ENST00000473405 CYTL1Q9NRR1 136 aa12.55□□□□□ -0.4
CCDC88B-206ENST00000473405 BOLA1Q9Y3E2 137 aa12.55□□□□□ -0.4
CCDC88B-206ENST00000473405 MAP1LC3B2A6NCE7 125 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 B4DEV8 164 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 KRBOX1C9JBD0 128 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 H3BVH4 76 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 LAGE3Q14657 143 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 LGALSLQ3ZCW2 172 aaPredicted RBP12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 DNLZQ5SXM8 178 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 SAMD10Q9BYL1 202 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 MAP1LC3BQ9GZQ8 125 aa12.54□□□□□ -0.4
CCDC88B-206ENST00000473405 GAGE12JA6NER3 117 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 ARPC5O15511 151 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 GAGE1Q13065 139 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 GAGE4Q13068 117 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 GAGE5Q13069 117 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 GAGE13Q4V321 117 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 Q5VSD8 79 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 DMRTA1Q5VZB9 504 aa12.53□□□□□ -0.4
CCDC88B-206ENST00000473405 IGLV5-52A0A0A0MRZ9 124 aa12.52□□□□□ -0.41
CCDC88B-206ENST00000473405 M0R036 132 aa12.52□□□□□ -0.41
CCDC88B-206ENST00000473405 SH2D1AO60880 128 aa12.52□□□□□ -0.41
CCDC88B-206ENST00000473405 C14orf178Q8N769 122 aaPredicted RBP12.52□□□□□ -0.41
CCDC88B-206ENST00000473405 Q8N814 137 aa12.52□□□□□ -0.41
CCDC88B-206ENST00000473405 NTN5Q8WTR8 489 aaPredicted RBP12.52□□□□□ -0.41
CCDC88B-206ENST00000473405 FMC1Q96HJ9 113 aa12.52□□□□□ -0.41
CCDC88B-206ENST00000473405 ARMS2P0C7Q2 107 aa12.51□□□□□ -0.41
CCDC88B-206ENST00000473405 FHITP49789 147 aa12.51□□□□□ -0.41
CCDC88B-206ENST00000473405 TCTE3Q8IZS6 198 aa12.51□□□□□ -0.41
CCDC88B-206ENST00000473405 ZFP30Q9Y2G7 519 aa12.51□□□□□ -0.41
CCDC88B-206ENST00000473405 GRIFINA4D1Z8 144 aa12.5□□□□□ -0.41
CCDC88B-206ENST00000473405 SMLR1H3BR10 107 aa12.5□□□□□ -0.41
CCDC88B-206ENST00000473405 HAMPP81172 84 aa12.5□□□□□ -0.41
CCDC88B-206ENST00000473405 ZNF674Q2M3X9 581 aa12.5□□□□□ -0.41
CCDC88B-206ENST00000473405 FAM162BQ5T6X4 162 aa12.5□□□□□ -0.41
CCDC88B-206ENST00000473405 FLG2Q5D862 2391 aaPredicted RBP12.5□□□□□ -0.41
CCDC88B-206ENST00000473405 TRBV6-1A0A0K0K1D8 114 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms