RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 NTN5Q8WTR8 489 aaPredicted RBP11.73□□□□□ -0.53
COL7A1-208ENST00000470076 SRRM2Q9UQ35 2752 aaKnown RBP11.73□□□□□ -0.53
COL7A1-208ENST00000470076 IGLV5-52A0A0A0MRZ9 124 aa11.72□□□□□ -0.53
COL7A1-208ENST00000470076 IGHV3-73A0A0B4J1V6 119 aa11.72□□□□□ -0.53
COL7A1-208ENST00000470076 PGPEP1LA6NFU8 196 aa11.72□□□□□ -0.53
COL7A1-208ENST00000470076 ZNF506Q5JVG8 444 aa11.72□□□□□ -0.53
COL7A1-208ENST00000470076 PRNTQ86SH4 94 aa11.72□□□□□ -0.53
COL7A1-208ENST00000470076 ACTR3CQ9C0K3 210 aaPredicted RBP11.72□□□□□ -0.53
COL7A1-208ENST00000470076 TNFSF18Q9UNG2 199 aa11.72□□□□□ -0.53
COL7A1-208ENST00000470076 RNASE3P12724 160 aaKnown RBP11.71□□□□□ -0.53
COL7A1-208ENST00000470076 ATP6V0E2Q8NHE4 81 aa11.71□□□□□ -0.53
COL7A1-208ENST00000470076 GTSF1LQ9H1H1 148 aa11.71□□□□□ -0.53
COL7A1-208ENST00000470076 Q9HAA7 133 aa11.71□□□□□ -0.53
COL7A1-208ENST00000470076 A0A1W2PRE2 83 aa11.7□□□□□ -0.54
COL7A1-208ENST00000470076 TMEM70Q9BUB7 260 aa11.7□□□□□ -0.54
COL7A1-208ENST00000470076 MED28Q9H204 178 aa11.7□□□□□ -0.54
COL7A1-208ENST00000470076 SH3BGRL3Q9H299 93 aa11.7□□□□□ -0.54
COL7A1-208ENST00000470076 IGHV3-30P01768 117 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 IGHV3-33P01772 117 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 IGHV3-30-3P0DP02 117 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 IGHV3-30-5P0DP03 117 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 LAGE3Q14657 143 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 PIK3CD-AS1Q5SR53 167 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 ZFP2Q6ZN57 461 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 Q8N814 137 aa11.69□□□□□ -0.54
COL7A1-208ENST00000470076 A8MWV9 139 aa11.68□□□□□ -0.54
COL7A1-208ENST00000470076 S100A4P26447 101 aaKnown RBP11.68□□□□□ -0.54
COL7A1-208ENST00000470076 IGKV3D-20A0A0C4DH25 116 aa11.67□□□□□ -0.54
COL7A1-208ENST00000470076 FABP5P3A8MUU1 101 aa11.67□□□□□ -0.54
COL7A1-208ENST00000470076 PTTG1O95997 202 aa11.67□□□□□ -0.54
COL7A1-208ENST00000470076 SMR3BP02814 79 aaPredicted RBP11.67□□□□□ -0.54
COL7A1-208ENST00000470076 INO80EQ8NBZ0 244 aaPredicted RBP11.67□□□□□ -0.54
COL7A1-208ENST00000470076 TM2D2Q9BX73 214 aa11.67□□□□□ -0.54
COL7A1-208ENST00000470076 PARLQ9H300 379 aa11.67□□□□□ -0.54
COL7A1-208ENST00000470076 FAM229AH3BQW9 127 aa11.66□□□□□ -0.54
COL7A1-208ENST00000470076 IFNA7P01567 189 aa11.66□□□□□ -0.54
COL7A1-208ENST00000470076 ASIPP42127 132 aa11.66□□□□□ -0.54
COL7A1-208ENST00000470076 LINC00479Q96M42 142 aa11.66□□□□□ -0.54
COL7A1-208ENST00000470076 ARL2-SNX15V9GYD0 113 aa11.66□□□□□ -0.54
COL7A1-208ENST00000470076 MYCBP2O75592 4640 aa11.66□□□□□ -0.54
COL7A1-208ENST00000470076 FLG2Q5D862 2391 aaPredicted RBP11.65□□□□□ -0.54
COL7A1-208ENST00000470076 BORCS7-ASMTA0A0B4J1R7 106 aa11.65□□□□□ -0.54
COL7A1-208ENST00000470076 TRAV34A0A0B4J273 112 aa11.65□□□□□ -0.54
COL7A1-208ENST00000470076 CTXND1A0A1B0GTU2 59 aa11.65□□□□□ -0.54
COL7A1-208ENST00000470076 GIPP09681 153 aaPredicted RBP11.65□□□□□ -0.54
COL7A1-208ENST00000470076 LGALSLQ3ZCW2 172 aaPredicted RBP11.65□□□□□ -0.54
COL7A1-208ENST00000470076 Q5BKY6 102 aa11.65□□□□□ -0.54
COL7A1-208ENST00000470076 RPL7L1Q6DKI1 246 aaKnown RBP11.65□□□□□ -0.54
COL7A1-208ENST00000470076 Q6ZSN1 163 aa11.65□□□□□ -0.54
COL7A1-208ENST00000470076 NKX6-2Q9C056 277 aaPredicted RBP11.65□□□□□ -0.54
COL7A1-208ENST00000470076 IL36BQ9NZH7 164 aa11.65□□□□□ -0.54
COL7A1-208ENST00000470076 GAGE12JA6NER3 117 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 LINC00694P0DN24 101 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 GAGE1Q13065 139 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 GAGE4Q13068 117 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 GAGE5Q13069 117 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 ZNF726P1Q15940 193 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 GAGE13Q4V321 117 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 BATF3Q9NR55 127 aa11.64□□□□□ -0.55
COL7A1-208ENST00000470076 A0A087WWC5 75 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 TRAV8-3A0A0A6YYJ7 113 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 RNF222A6NCQ9 220 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 PEX7O00628 323 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 C1QBP02746 253 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 HAMPP81172 84 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 Q86TA4 180 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 HIST1H2BAQ96A08 127 aa11.63□□□□□ -0.55
COL7A1-208ENST00000470076 B4DEV8 164 aa11.62□□□□□ -0.55
COL7A1-208ENST00000470076 FGF8P55075 233 aaPredicted RBP11.62□□□□□ -0.55
COL7A1-208ENST00000470076 UBE2G2P60604 165 aa11.62□□□□□ -0.55
COL7A1-208ENST00000470076 TOR2AQ5JU69 321 aa11.62□□□□□ -0.55
COL7A1-208ENST00000470076 DNLZQ5SXM8 178 aa11.62□□□□□ -0.55
COL7A1-208ENST00000470076 UFSP1Q6NVU6 142 aa11.62□□□□□ -0.55
COL7A1-208ENST00000470076 SYT8Q8NBV8 401 aa11.62□□□□□ -0.55
COL7A1-208ENST00000470076 OR2T35Q8NGX2 323 aa11.62□□□□□ -0.55
COL7A1-208ENST00000470076 DNAH8Q96JB1 4490 aa11.61□□□□□ -0.55
COL7A1-208ENST00000470076 FXYD6-FXYD2A0A087WZ82 144 aa11.61□□□□□ -0.55
COL7A1-208ENST00000470076 FAM74A7A6NL05 159 aa11.61□□□□□ -0.55
COL7A1-208ENST00000470076 RHODO00212 210 aa11.61□□□□□ -0.55
COL7A1-208ENST00000470076 Q8N3U1 123 aa11.61□□□□□ -0.55
COL7A1-208ENST00000470076 JPT2Q9H910 190 aa11.61□□□□□ -0.55
COL7A1-208ENST00000470076 ZFP30Q9Y2G7 519 aa11.61□□□□□ -0.55
COL7A1-208ENST00000470076 KRBOX1C9JBD0 128 aa11.6□□□□□ -0.55
COL7A1-208ENST00000470076 H3BVH4 76 aa11.6□□□□□ -0.55
COL7A1-208ENST00000470076 AKR1C8PQ5T2L2 129 aa11.6□□□□□ -0.55
COL7A1-208ENST00000470076 DMRTA1Q5VZB9 504 aa11.6□□□□□ -0.55
COL7A1-208ENST00000470076 COX8CQ7Z4L0 72 aa11.6□□□□□ -0.55
COL7A1-208ENST00000470076 DAZ4Q86SG3 579 aaKnown RBP11.6□□□□□ -0.55
COL7A1-208ENST00000470076 C14orf178Q8N769 122 aaPredicted RBP11.6□□□□□ -0.55
COL7A1-208ENST00000470076 ZC2HC1AQ96GY0 325 aa11.6□□□□□ -0.55
COL7A1-208ENST00000470076 SAMD10Q9BYL1 202 aa11.6□□□□□ -0.55
COL7A1-208ENST00000470076 DAZ3Q9NR90 486 aaKnown RBP11.6□□□□□ -0.55
COL7A1-208ENST00000470076 ARMS2P0C7Q2 107 aa11.59□□□□□ -0.55
COL7A1-208ENST00000470076 CRIP1P50238 77 aa11.59□□□□□ -0.55
COL7A1-208ENST00000470076 WFDC2Q14508 124 aa11.59□□□□□ -0.55
COL7A1-208ENST00000470076 OR11H4Q8NGC9 324 aa11.59□□□□□ -0.55
COL7A1-208ENST00000470076 FAM30AQ9NZY2 134 aa11.59□□□□□ -0.55
COL7A1-208ENST00000470076 Q9UF83 564 aa11.59□□□□□ -0.55
COL7A1-208ENST00000470076 COX11Q9Y6N1 276 aa11.59□□□□□ -0.55
COL7A1-208ENST00000470076 M0R036 132 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms