RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PTPN13Q12923 2485 aa6.71□□□□□ -1.34
SYNE1-217ENST00000466159 RNF223E7ERA6 249 aa6.71□□□□□ -1.34
SYNE1-217ENST00000466159 IGKCP01834 107 aa6.71□□□□□ -1.34
SYNE1-217ENST00000466159 MGPP08493 103 aa6.71□□□□□ -1.34
SYNE1-217ENST00000466159 MYOZ3Q8TDC0 251 aa6.71□□□□□ -1.34
SYNE1-217ENST00000466159 TRBV7-9A0A0J9YWB2 115 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 KLLNB2CW77 178 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 ATP5LO75964 103 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 ZNF688P0C7X2 276 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 ID1P41134 155 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 SUMO2P61956 95 aaKnown RBP6.7□□□□□ -1.34
SYNE1-217ENST00000466159 TMEM160Q9NX00 188 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 COX6B1P14854 86 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 RNF151Q2KHN1 245 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 ADAMTSL5Q6ZMM2 481 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 GTSCR1Q86UQ5 136 aa6.7□□□□□ -1.34
SYNE1-217ENST00000466159 MRPL35Q9NZE8 188 aaKnown RBP6.7□□□□□ -1.34
SYNE1-217ENST00000466159 TRAV12-3A0A0B4J271 114 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 DPM2O94777 84 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 IGKV3-20P01619 116 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 MED14OSP0DP75 135 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 SYNJ2BPP57105 145 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 KRTAP10-9P60411 292 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 PSMG4Q5JS54 123 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 ZC2HC1BQ5TFG8 222 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 OR4C5Q8NGB2 326 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 OR9G4Q8NGQ1 327 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 DUX5Q96PT3 197 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 J3QLI3 93 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 SIVA1O15304 175 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 CR1P17927 2039 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 AMMECR1LQ6DCA0 310 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 FAM159AQ6UWV7 190 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 ABCA12Q86UK0 2595 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 JPT2Q9H910 190 aa6.69□□□□□ -1.34
SYNE1-217ENST00000466159 TEX15Q9BXT5 2789 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 TRAV8-6A0A0B4J262 113 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 SEC11AP67812 179 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 AP1S3Q96PC3 154 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 C20orf78Q9BR46 151 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 BEX4Q9NWD9 120 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-217ENST00000466159 VPREB3Q9UKI3 123 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 ZNF469Q96JG9 3925 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-217ENST00000466159 TRAV12-2A0A075B6T6 113 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 IGHV4OR15-8A0A075B7B6 117 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 A0A087WW49 117 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 A0A087WX48 190 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 CD7P09564 240 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 HSD52Q0P140 79 aa6.68□□□□□ -1.34
SYNE1-217ENST00000466159 TMEM89A2RUT3 159 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-217ENST00000466159 IGHV4-31P0DP07 118 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 LINC00315P59091 139 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 Q6YL49 198 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 NEGR1Q7Z3B1 354 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 DEFB104AQ8WTQ1 72 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 ZNF702PQ9H963 129 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 KIF25-AS1Q9Y6Z4 181 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 UBR5O95071 2799 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-217ENST00000466159 HOXA3O43365 443 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-217ENST00000466159 NXPH4O95158 308 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 ORMDL2Q53FV1 153 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 TOMM6Q96B49 74 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 SCGB3A1Q96QR1 104 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 CREBBPQ92793 2442 aa6.67□□□□□ -1.34
SYNE1-217ENST00000466159 KMT2BQ9UMN6 2715 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-217ENST00000466159 A0A087WWL8 130 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 A0A0J9YX75 114 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 K7EQG2 157 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 FSHBP01225 129 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 LGALS1P09382 135 aaKnown RBP6.66□□□□□ -1.34
SYNE1-217ENST00000466159 HOXD3P31249 432 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-217ENST00000466159 SNRPD3P62318 126 aaKnown RBP6.66□□□□□ -1.34
SYNE1-217ENST00000466159 SAMD13Q5VXD3 122 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 CSTL1Q9H114 145 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 NAV2Q8IVL1 2488 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 OCIAD2Q56VL3 154 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 C2orf66Q6UXQ4 117 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 ZNF843Q8N446 348 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 POM121L12Q8N7R1 296 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 NAA38Q9BRA0 125 aaKnown RBP6.66□□□□□ -1.34
SYNE1-217ENST00000466159 CST9LQ9H4G1 147 aa6.66□□□□□ -1.34
SYNE1-217ENST00000466159 TRBV25-1A0A075B6N4 114 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 A6NDN8 102 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 SPINK13Q1W4C9 94 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 C18orf65Q6ZTR6 163 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 MAPKAPK5-AS1Q8N8E1 139 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 MDFICQ9P1T7 246 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 H7C1H1 209 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 ELANEP08246 267 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 DEFB136Q30KP8 78 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 SUMO4Q6EEV6 95 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 NEXN-AS1Q8NBZ9 246 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 RAB37Q96AX2 223 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 UBE2E2Q96LR5 201 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 VPS25Q9BRG1 176 aa6.65□□□□□ -1.34
SYNE1-217ENST00000466159 TRAV12-1A0A0B4J245 112 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 IGHV3-16A0A0C4DH30 117 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 F5H697 171 aa6.64□□□□□ -1.35
SYNE1-217ENST00000466159 F8VRH5 84 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms