RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IQCF2Q8IXL9 164 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 Q8TAT8 98 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 MARVELD1Q9BSK0 173 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 SPXQ9BT56 116 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 SCRT2Q9NQ03 307 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 PTTG2Q9NZH5 202 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 HSPB11Q9Y547 144 aa4.94□□□□□ -1.62
USP54-208ENST00000461520 DMBT1Q9UGM3 2413 aaPredicted RBP4.93□□□□□ -1.62
USP54-208ENST00000461520 TRGV4A0A0C4DH28 118 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 K7EP13 123 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 NXPH4O95158 308 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 MPC2O95563 127 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 IFNA5P01569 189 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 RPL12P30050 165 aaKnown RBP4.93□□□□□ -1.62
USP54-208ENST00000461520 TDRG1Q3Y452 100 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 FFAR4Q5NUL3 377 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 FAM74A1Q5RGS3 127 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 MUC21Q5SSG8 566 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 WDR73Q6P4I2 378 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 LYPD5Q6UWN5 251 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 NEGR1Q7Z3B1 354 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 ARL6IP6Q8N6S5 226 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 SCGB1C1Q8TD33 95 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 RASL10AQ92737 203 aa4.93□□□□□ -1.62
USP54-208ENST00000461520 TRAV9-2A0A087WT02 112 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 K7EQD1 137 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 SSNA1O43805 119 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 ORM1P02763 201 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 CFC1BP0CG36 223 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 CFC1P0CG37 223 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 SRIP30626 198 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 DEFA1P59665 94 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 DEFA3P59666 94 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 ACOT6Q3I5F7 207 aaPredicted RBP4.92□□□□□ -1.62
USP54-208ENST00000461520 PQLC2Q6ZP29 291 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 NFE4Q86UQ8 179 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 OR10G4Q8NGN3 311 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 CMTM2Q8TAZ6 248 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 MBD2Q9UBB5 411 aa4.92□□□□□ -1.62
USP54-208ENST00000461520 TRAV4A0A0B4J268 109 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 TRAV21A0A0B4J279 112 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 A0A1W2PPV4 95 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 PGPA6NDG6 321 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 SFTA3P0C7M3 94 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 TMEM183BQ1AE95 376 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 TMEM183AQ8IXX5 376 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 PCNPQ8WW12 178 aaKnown RBP4.91□□□□□ -1.62
USP54-208ENST00000461520 HYLS1Q96M11 299 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 TXNDC17Q9BRA2 123 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 SMIM3Q9BZL3 60 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 OTORQ9NRC9 128 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 LY96Q9Y6Y9 160 aa4.91□□□□□ -1.62
USP54-208ENST00000461520 C9JCJ5 164 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 M0R2P5 195 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 EVI2AP22794 236 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 LCE1FQ5T754 118 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 GOLT1AQ6ZVE7 132 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 SH2D6Q7Z4S9 175 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 OR4C5Q8NGB2 326 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 KCNS1Q96KK3 526 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 WFDC1Q9HC57 220 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 NAGKQ9UJ70 344 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 FAT1Q14517 4588 aa4.9□□□□□ -1.63
USP54-208ENST00000461520 A0A087WTM6 91 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 IGHV3-16A0A0C4DH30 117 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 SERTM2A0A1B0GWG4 89 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 GNRH2O43555 120 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 CIDEAO60543 219 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 EIF3GO75821 320 aaKnown RBP eCLIP4.89□□□□□ -1.63
USP54-208ENST00000461520 TYMSP04818 313 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 DNAH10OSP0CZ25 163 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 WFDC10BQ8IUB3 73 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 C10orf126Q8N4M7 172 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 OR10G9Q8NGN4 311 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 OR10G7Q8NGN6 311 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 TVP23CQ96ET8 276 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 NDFIP1Q9BT67 221 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 TREM1Q9NP99 234 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 RPH3ALQ9UNE2 315 aa4.89□□□□□ -1.63
USP54-208ENST00000461520 TRAV8-1A0A0A6YYK1 113 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 F6UZH7 168 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 STAG3L2P0CL84 134 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 STAG3L3P0CL85 134 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 CDC34P49427 236 aaPredicted RBP4.88□□□□□ -1.63
USP54-208ENST00000461520 RAB2AP61019 212 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 OR2G3Q8NGZ4 309 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 SUN5Q8TC36 379 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 ASB13Q8WXK3 278 aa4.88□□□□□ -1.63
USP54-208ENST00000461520 PSMG3Q9BT73 122 aaPredicted RBP4.88□□□□□ -1.63
USP54-208ENST00000461520 IGHV3-38A0A0C4DH36 116 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 FBLL1A6NHQ2 334 aaKnown RBP4.87□□□□□ -1.63
USP54-208ENST00000461520 EPM2AB3EWF7 344 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 K7EQM0 130 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 TAAR5O14804 337 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 HMGB3O15347 200 aaKnown RBP4.87□□□□□ -1.63
USP54-208ENST00000461520 MBP02144 154 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 TCRAP04437 139 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 CRYGDP07320 174 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 PFN1P07737 140 aaKnown RBP4.87□□□□□ -1.63
USP54-208ENST00000461520 ARL14EPLP0DKL9 152 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms